Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021213
(707 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g37410.2 68415.m04588 mitochondrial import inner membrane tra... 38 0.009
At2g37410.1 68415.m04587 mitochondrial import inner membrane tra... 38 0.009
At3g02670.1 68416.m00258 proline-rich family protein contains pr... 36 0.026
At1g64450.1 68414.m07306 proline-rich family protein contains pr... 33 0.14
At4g28520.3 68417.m04081 12S seed storage protein, putative / cr... 33 0.19
At4g28520.2 68417.m04079 12S seed storage protein, putative / cr... 33 0.19
At4g28520.1 68417.m04080 12S seed storage protein, putative / cr... 33 0.19
At5g57870.2 68418.m07239 eukaryotic translation initiation facto... 29 3.0
At5g57870.1 68418.m07238 eukaryotic translation initiation facto... 29 3.0
At4g21700.1 68417.m03142 hypothetical protein 29 3.0
At1g72840.1 68414.m08425 disease resistance protein (TIR-NBS-LRR... 29 4.0
At5g28480.1 68418.m03462 hypothetical protein 28 7.0
At4g31040.1 68417.m04408 proton extrusion protein-related contai... 28 7.0
At4g22670.1 68417.m03272 tetratricopeptide repeat (TPR)-containi... 28 7.0
At2g12100.1 68415.m01300 Ulp1 protease family protein contains P... 28 7.0
At1g45090.1 68414.m05169 Ulp1 protease family protein similar to... 28 7.0
At1g44222.1 68414.m05107 hypothetical protein 28 7.0
At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi do... 28 7.0
At1g11200.1 68414.m01283 expressed protein contains Pfam profile... 28 7.0
At5g01270.1 68418.m00036 double-stranded RNA-binding domain (DsR... 27 9.2
At2g40050.1 68415.m04921 DC1 domain-containing protein contains ... 27 9.2
>At2g37410.2 68415.m04588 mitochondrial import inner membrane
translocase (TIM17) nearly identical to SP|Q9SP35
Mitochondrial import inner membrane translocase subunit
TIM17 {Arabidopsis thaliana}
Length = 243
Score = 37.5 bits (83), Expect = 0.009
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +3
Query: 336 PGPRGLPGIQGMEGERGEIGMTGQSGLPG 422
PG +G+PG+QGM+G G GM G G+ G
Sbjct: 148 PGMQGMPGMQGMQGMPGMPGMQGMPGMQG 176
Score = 36.3 bits (80), Expect = 0.020
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +1
Query: 91 GPPGQKGDRGYPGRPGLQGEQGMKG 165
G PG +G +G PG PG+QG GM+G
Sbjct: 152 GMPGMQGMQGMPGMPGMQGMPGMQG 176
Score = 34.3 bits (75), Expect = 0.080
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +3
Query: 354 PGIQGMEGERGEIGMTGQSGLPGAPG 431
PG+QGM G +G GM G G+ G PG
Sbjct: 148 PGMQGMPGMQGMQGMPGMPGMQGMPG 173
Score = 32.7 bits (71), Expect = 0.25
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 297 EKGDRGFTGARGFPGPRGLPGIQGMEGERG 386
+ G +G G +G G G+PG+QGM G +G
Sbjct: 147 DPGMQGMPGMQGMQGMPGMPGMQGMPGMQG 176
Score = 32.3 bits (70), Expect = 0.32
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 306 DRGFTGARGFPGPRGLPGIQGMEGERGEIGM 398
D G G G G +G+PG+ GM+G G GM
Sbjct: 147 DPGMQGMPGMQGMQGMPGMPGMQGMPGMQGM 177
Score = 32.3 bits (70), Expect = 0.32
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 303 GDRGFTGARGFPGPRGLPGIQGME 374
G +G G G PG +G+PG+QGM+
Sbjct: 155 GMQGMQGMPGMPGMQGMPGMQGMQ 178
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 91 GPPGQKGDRGYPGRPGLQGEQGMKGNKG 174
G G G +G G PG+ G QGM G +G
Sbjct: 149 GMQGMPGMQGMQGMPGMPGMQGMPGMQG 176
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 112 DRGYPGRPGLQGEQGMKGNKG 174
D G G PG+QG QGM G G
Sbjct: 147 DPGMQGMPGMQGMQGMPGMPG 167
>At2g37410.1 68415.m04587 mitochondrial import inner membrane
translocase (TIM17) nearly identical to SP|Q9SP35
Mitochondrial import inner membrane translocase subunit
TIM17 {Arabidopsis thaliana}
Length = 243
Score = 37.5 bits (83), Expect = 0.009
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +3
Query: 336 PGPRGLPGIQGMEGERGEIGMTGQSGLPG 422
PG +G+PG+QGM+G G GM G G+ G
Sbjct: 148 PGMQGMPGMQGMQGMPGMPGMQGMPGMQG 176
Score = 36.3 bits (80), Expect = 0.020
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +1
Query: 91 GPPGQKGDRGYPGRPGLQGEQGMKG 165
G PG +G +G PG PG+QG GM+G
Sbjct: 152 GMPGMQGMQGMPGMPGMQGMPGMQG 176
Score = 34.3 bits (75), Expect = 0.080
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +3
Query: 354 PGIQGMEGERGEIGMTGQSGLPGAPG 431
PG+QGM G +G GM G G+ G PG
Sbjct: 148 PGMQGMPGMQGMQGMPGMPGMQGMPG 173
Score = 32.7 bits (71), Expect = 0.25
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 297 EKGDRGFTGARGFPGPRGLPGIQGMEGERG 386
+ G +G G +G G G+PG+QGM G +G
Sbjct: 147 DPGMQGMPGMQGMQGMPGMPGMQGMPGMQG 176
Score = 32.3 bits (70), Expect = 0.32
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 306 DRGFTGARGFPGPRGLPGIQGMEGERGEIGM 398
D G G G G +G+PG+ GM+G G GM
Sbjct: 147 DPGMQGMPGMQGMQGMPGMPGMQGMPGMQGM 177
Score = 32.3 bits (70), Expect = 0.32
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 303 GDRGFTGARGFPGPRGLPGIQGME 374
G +G G G PG +G+PG+QGM+
Sbjct: 155 GMQGMQGMPGMPGMQGMPGMQGMQ 178
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 91 GPPGQKGDRGYPGRPGLQGEQGMKGNKG 174
G G G +G G PG+ G QGM G +G
Sbjct: 149 GMQGMPGMQGMQGMPGMPGMQGMPGMQG 176
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 112 DRGYPGRPGLQGEQGMKGNKG 174
D G G PG+QG QGM G G
Sbjct: 147 DPGMQGMPGMQGMQGMPGMPG 167
>At3g02670.1 68416.m00258 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 217
Score = 35.9 bits (79), Expect = 0.026
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +1
Query: 94 PPGQKGDRGYPGRPGLQGEQGMKGNKGQAAELVYGAKGEPGPRGLPGNDGLPG 252
P G+ G PG PG+ G G+ G+ G L + PG +PG G PG
Sbjct: 104 PSSPGGNPGIPGIPGIPGLPGIPGSPG--FRLPFPFPSSPGGGSIPGIPGSPG 154
Score = 35.1 bits (77), Expect = 0.046
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +1
Query: 91 GPPGQKGDRGYPGRPGLQGEQGMKGNKGQAAELVYGAK--GEPGPRGLPGNDGLPGV 255
G PG + +P PG G G+ G+ G + + G PG G+PG GLPG+
Sbjct: 71 GSPGFRLPFPFPSSPG--GNPGIPGSPGFRLPFPFPSSPGGNPGIPGIPGIPGLPGI 125
Score = 33.9 bits (74), Expect = 0.11
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = +3
Query: 312 GFTGARGFPGPRGLPGIQGMEGERGEI---GMTGQSGLPGAPGAP 437
G G G PG GLPGI G G R G +PG PG+P
Sbjct: 109 GNPGIPGIPGIPGLPGIPGSPGFRLPFPFPSSPGGGSIPGIPGSP 153
Score = 31.5 bits (68), Expect = 0.57
Identities = 20/44 (45%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Frame = -1
Query: 263 NAVTPGRPSFPGKPRGPGSP-FA---PYTSSAAWPLLPFIPCSP 144
N PG P PG P PGSP F P+ SS +P IP SP
Sbjct: 110 NPGIPGIPGIPGLPGIPGSPGFRLPFPFPSSPGGGSIPGIPGSP 153
>At1g64450.1 68414.m07306 proline-rich family protein contains
proline rich extensins, INTERPRO:IPR0002965
Length = 342
Score = 33.5 bits (73), Expect = 0.14
Identities = 27/84 (32%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
Frame = -1
Query: 257 VTPGRPSFPGKPRGPGSPFAP-YTSSAAWPLLPFIPCSPCKXXXXXXXXXXXXXXXXXXX 81
+ PG P F PR P SP+ P Y S P LP P SP
Sbjct: 149 IIPGPPDFTVTPRNPDSPYFPGYPES---PDLPGNPGSP------DFSGNPGPPSFPRNP 199
Query: 80 XXXXXPSNPRSPLSPFSPGNPGIP 9
P NP +P+ P +PG+P P
Sbjct: 200 GSPEFPGNPGAPIIPRNPGSPEFP 223
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/47 (29%), Positives = 19/47 (40%)
Frame = +3
Query: 312 GFTGARGFPGPRGLPGIQGMEGERGEIGMTGQSGLPGAPGAPCVSQD 452
G+ + PG G P G G G PG PGAP + ++
Sbjct: 170 GYPESPDLPGNPGSPDFSGNPGPPSFPRNPGSPEFPGNPGAPIIPRN 216
>At4g28520.3 68417.m04081 12S seed storage protein, putative /
cruciferin, putative strong similarity to SP|P33525
Cruciferin CRU1 precursor (11S globulin) (12S storage
protein) from Brassica napus; contains Pfam profile
PF00190 Cupin and Prosite 11-S plant seed storage
proteins signature PS00305 isoform contains
non-consensus AC acceptor splice site at intron 3
Length = 453
Score = 33.1 bits (72), Expect = 0.19
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +1
Query: 91 GPPGQKGDRGYPGRPGL-QGEQGMKGNKGQAAELVYGAKGEPGPRGLPGNDGLP 249
G P Q G +G G+P QG+QG +G +GQ E +G+ G +G G G P
Sbjct: 129 GQPWQ-GRQGQQGQPWEGQGQQGQQGRQGQPWE----GQGQQGQQGRQGQQGQP 177
Score = 33.1 bits (72), Expect = 0.19
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Frame = +1
Query: 100 GQKGDRGYPGRP----GLQGEQGMKGNKGQAAELVYGAKGEPGPRGL 228
GQ+G +G G+P G QG+QG +G +GQ E G +G+ G R +
Sbjct: 147 GQQGQQGRQGQPWEGQGQQGQQGRQGQQGQPWE-GQGQQGQQGFRDM 192
>At4g28520.2 68417.m04079 12S seed storage protein, putative /
cruciferin, putative strong similarity to SP|P33525
Cruciferin CRU1 precursor (11S globulin) (12S storage
protein) from Brassica napus; contains Pfam profile
PF00190 Cupin and Prosite 11-S plant seed storage
proteins signature PS00305 isoform contains
non-consensus AC acceptor splice site at intron 3
Length = 394
Score = 33.1 bits (72), Expect = 0.19
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +1
Query: 91 GPPGQKGDRGYPGRPGL-QGEQGMKGNKGQAAELVYGAKGEPGPRGLPGNDGLP 249
G P Q G +G G+P QG+QG +G +GQ E +G+ G +G G G P
Sbjct: 129 GQPWQ-GRQGQQGQPWEGQGQQGQQGRQGQPWE----GQGQQGQQGRQGQQGQP 177
Score = 33.1 bits (72), Expect = 0.19
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Frame = +1
Query: 100 GQKGDRGYPGRP----GLQGEQGMKGNKGQAAELVYGAKGEPGPRGL 228
GQ+G +G G+P G QG+QG +G +GQ E G +G+ G R +
Sbjct: 147 GQQGQQGRQGQPWEGQGQQGQQGRQGQQGQPWE-GQGQQGQQGFRDM 192
>At4g28520.1 68417.m04080 12S seed storage protein, putative /
cruciferin, putative strong similarity to SP|P33525
Cruciferin CRU1 precursor (11S globulin) (12S storage
protein) from Brassica napus; contains Pfam profile
PF00190 Cupin and Prosite 11-S plant seed storage
proteins signature PS00305 isoform contains
non-consensus AC acceptor splice site at intron 3
Length = 524
Score = 33.1 bits (72), Expect = 0.19
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +1
Query: 91 GPPGQKGDRGYPGRPGL-QGEQGMKGNKGQAAELVYGAKGEPGPRGLPGNDGLP 249
G P Q G +G G+P QG+QG +G +GQ E +G+ G +G G G P
Sbjct: 129 GQPWQ-GRQGQQGQPWEGQGQQGQQGRQGQPWE----GQGQQGQQGRQGQQGQP 177
Score = 33.1 bits (72), Expect = 0.19
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Frame = +1
Query: 100 GQKGDRGYPGRP----GLQGEQGMKGNKGQAAELVYGAKGEPGPRGL 228
GQ+G +G G+P G QG+QG +G +GQ E G +G+ G R +
Sbjct: 147 GQQGQQGRQGQPWEGQGQQGQQGRQGQQGQPWE-GQGQQGQQGFRDM 192
>At5g57870.2 68418.m07239 eukaryotic translation initiation factor
4F, putative / eIF-4F, putative similar to SP|Q03387
Eukaryotic initiation factor (iso)4F subunit P82-34
(eIF-(iso)4F P82-34) {Triticum aestivum}; contains Pfam
profiles PF02854: MIF4G domain, PF02847: MA3 domain
Length = 776
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +3
Query: 330 GFPGPRGLPGIQGMEGERGEIGMTGQSGLPGAPG---APCVSQ 449
G PG R +PG+ G++ + E+ T PG +P VS+
Sbjct: 501 GMPGTRRMPGMPGVDNDNWEVPRTRSMSRRDGPGPLHSPAVSK 543
>At5g57870.1 68418.m07238 eukaryotic translation initiation factor
4F, putative / eIF-4F, putative similar to SP|Q03387
Eukaryotic initiation factor (iso)4F subunit P82-34
(eIF-(iso)4F P82-34) {Triticum aestivum}; contains Pfam
profiles PF02854: MIF4G domain, PF02847: MA3 domain
Length = 780
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +3
Query: 330 GFPGPRGLPGIQGMEGERGEIGMTGQSGLPGAPG---APCVSQ 449
G PG R +PG+ G++ + E+ T PG +P VS+
Sbjct: 505 GMPGTRRMPGMPGVDNDNWEVPRTRSMSRRDGPGPLHSPAVSK 547
>At4g21700.1 68417.m03142 hypothetical protein
Length = 962
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -1
Query: 308 IPLFTRGSIITWTTRNAVTPGRPSFPGKPRGPGSPFAP 195
+PL+ G +I W TP R + GKP+ + P
Sbjct: 777 LPLYITGGLIAWLVNRNRTPKRIVYIGKPQARNLLYRP 814
>At1g72840.1 68414.m08425 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1183
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -3
Query: 381 FHLPFPVYLGDLLVPGNL*HQ*NLYPPFHQGVHYYLDDQERRYAW 247
FHL FP + + G+ ++ NL P +Q D+ R Y W
Sbjct: 1091 FHLQFPAFSYNWDCEGSRLYRINLKPNLYQSSEMMEDNNNRPYKW 1135
>At5g28480.1 68418.m03462 hypothetical protein
Length = 1230
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 303 GDRGFTGARGFPGPRGLPGIQGMEGERGEIG 395
G+ G +G G GP G G G G GE+G
Sbjct: 444 GEGGPSGGDGEGGPNGADGEGGPNGADGEVG 474
>At4g31040.1 68417.m04408 proton extrusion protein-related contains
weak similarity to Proton extrusion protein pcxA
(Swiss-Prot:P75028) [Synechocystis sp.]
Length = 438
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +2
Query: 335 PGTKRSPRYTGNGR*KRRNWYDRSKWTSRSAWSTMR 442
P +++ +TGN +RR+W+ R + W +R
Sbjct: 54 PSAEKNNSHTGNNNKRRRSWWQRFFFDDDGNWLGLR 89
>At4g22670.1 68417.m03272 tetratricopeptide repeat (TPR)-containing
protein similar to Hsc70-interacting protein (Hip) from
{Homo sapiens} SP|P50502, {Rattus norvegicus} SP|P50503;
contains Pfam profile PF00515: tetratricopeptide repeat
(TPR) domain
Length = 441
Score = 27.9 bits (59), Expect = 7.0
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Frame = +1
Query: 118 GYPGRPGLQGEQGMKGNK---GQAAELVYGAKGEPGPRG-LPGNDGLPGVTAFLVVQVIM 285
G+PG G GM G G G G PG G +PG G+PG F +++
Sbjct: 333 GFPGGMGGGMPAGMGGGMPGMGGGMPAGMGGGGMPGAGGGMPGGGGMPGGMDF--SKILN 390
Query: 286 DP 291
DP
Sbjct: 391 DP 392
>At2g12100.1 68415.m01300 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At5g28270, At2g05450,
At1g45090, At2g16180, At2g06750
Length = 1224
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 303 GDRGFTGARGFPGPRGLPGIQGMEGERGEIG 395
G+ G +G G GP G G G G GE+G
Sbjct: 457 GEGGPSGGDGEGGPNGADGEGGPNGADGEVG 487
>At1g45090.1 68414.m05169 Ulp1 protease family protein similar to
At5g28270, At2g12100, At2g05450, At2g16180, At2g06750;
contains Pfam profile PF02902: Ulp1 protease family,
C-terminal catalytic domain
Length = 1210
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 303 GDRGFTGARGFPGPRGLPGIQGMEGERGEIG 395
G+ G +G G GP G G G G GE+G
Sbjct: 448 GEGGPSGGDGEGGPNGADGEGGPNGADGEVG 478
>At1g44222.1 68414.m05107 hypothetical protein
Length = 85
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 339 GPRGLPGIQGMEGERGEIGMTGQSGLPGAPG 431
G G PG+ G G G +GM G SG+ G G
Sbjct: 3 GRLGRPGMLGSPGMLGILGMFGISGMVGRLG 33
>At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi
domain-containing protein contains Pfam profiles
PF02170: PAZ domain, PF02171: Piwi domain
Length = 1194
Score = 27.9 bits (59), Expect = 7.0
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +1
Query: 100 GQKGDRGYPGRPGLQGEQGMKGNKGQAAELVYGAKGEPGPRGLPGNDG 243
G GDRGY GR G +G G++G+ Y +G+ RG G+ G
Sbjct: 36 GGDGDRGYSGRGDGHG-RGGGGDRGRG----YSGRGDGRGRGGGGDRG 78
>At1g11200.1 68414.m01283 expressed protein contains Pfam profile
PF03619: Domain of unknown function
Length = 295
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Frame = -3
Query: 219 RSW-FSFCAVHEFCRLAFITFHPLFTL*AWSSWIAT 115
+ W + FC + C + IT L W SWI T
Sbjct: 145 KQWTWQFCIIRPVCSILMITLQILGIYPVWLSWIFT 180
>At5g01270.1 68418.m00036 double-stranded RNA-binding domain
(DsRBD)-containing protein contains Pfam profile
PF00035: Double-stranded RNA binding motif
Length = 771
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 245 RPSFPGKPRGPGSPFAPYTSSAAWPLLPF 159
RPSFPG+P G P+ + + P+ PF
Sbjct: 572 RPSFPGRPSGLYPSQFPHGTPGSAPVGPF 600
>At2g40050.1 68415.m04921 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 609
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/48 (25%), Positives = 22/48 (45%)
Frame = -1
Query: 671 LRNYRHHLSHKIGMALY*TFSHKNQHILNLDYGLFRCHLCTIKNIHPI 528
+ +RH +S + F + +N+DYG + C C+ +H I
Sbjct: 247 ISRHRHRISFTFSLTSREWFCGVCRLSINVDYGAYTCDTCSDYVVHSI 294
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,175,436
Number of Sequences: 28952
Number of extensions: 298828
Number of successful extensions: 930
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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