Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021212
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    51   1e-07
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    41   1e-04
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    32   0.066
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   5.7  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.7  
SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   10.0 
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo...    25   10.0 

>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 26/63 (41%), Positives = 34/63 (53%)
 Frame = +1

Query: 484 RASNGSQCKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQCLKTP*ASLLEFYF 663
           +   G   KGIP+FW    +NV  LSEM+   DE  L  L DI++  ++ P    LEF F
Sbjct: 154 KQEGGDDTKGIPEFWLTAMKNVLSLSEMITPEDEGALSHLVDIRISYMEKP-GFKLEFEF 212

Query: 664 APN 672
           A N
Sbjct: 213 AEN 215


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = +1

Query: 508 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIK 615
           KGIP+FW     NV ++ EM+   DE +L+ L DI+
Sbjct: 164 KGIPEFWLTCLHNVFLVGEMITPEDENVLRSLSDIR 199


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 32.3 bits (70), Expect = 0.066
 Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
 Frame = -3

Query: 607 LASILELVHHVLASFR*ALRHS*ICCTKSLGYPYIGIH-WRLDSLVILLFLTLSDGSI-- 437
           LAS++  V   +A F  +L +S    T  L   Y G+  + + ++ ILLF ++  G++  
Sbjct: 628 LASVMYYVAEQVAFF--SLGNSNSLATVDLSQAYTGLDSYNIFAVGILLFTSVFAGALWW 685

Query: 436 -LYRPS*LFFFSVITPWVETFIIIRFIC 356
            L++P  +   SV T W+ + I + F+C
Sbjct: 686 CLHQPKRMMDRSVKTFWIMSSISLTFLC 713


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 114  HLLKSGVTRNEMIAAITNRLHAEAMASLP 200
            HLL++  T +E  AA   +LH + + S P
Sbjct: 1596 HLLRNSATNDETKAAFVYQLHKQGILSEP 1624


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 410 EEELARSVQNAAITEGEEKKDDKAIEPPMDPNV 508
           EEEL+ S+ N    + E++KD+   +P   P++
Sbjct: 475 EEELSDSLSNDFGIDAEKEKDENLSKPEHHPSI 507


>SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +3

Query: 186 MASLPPNVRRRIRALRTLQ*EFVTLRPSFTVKYMHSNANMKNFTSLFM 329
           MA LPP    RI   +  +   ++L   F  KY+  N N+ N   +F+
Sbjct: 190 MAILPPMAALRILFYQYSKASTMSLTDDFYNKYVLENLNIINNLQIFL 237


>SPBC1604.04 |||thiamine pyrophosphate
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 476 KAIEPPMDPNVRVSQTFGTTYSGMSQC 556
           KAI  P+D  V+  QTF + Y     C
Sbjct: 207 KAIMFPVDTVVKTLQTFPSNYKSFKDC 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,687,981
Number of Sequences: 5004
Number of extensions: 51628
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)