Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021212
(675 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0234 - 26602660-26602728,26602814-26602988,26603077-266031... 57 1e-08
06_01_0356 + 2557127-2557193,2557272-2557315,2557433-2557528,255... 54 8e-08
06_03_0740 - 24006485-24006629,24006821-24006864,24006954-240071... 51 7e-07
01_06_0465 - 29573972-29574110,29574300-29574343,29574434-295746... 48 5e-06
04_04_0122 - 22918146-22918220,22918455-22918496,22918586-229186... 38 0.010
02_04_0344 - 22171401-22171448,22171725-22171760,22171996-221720... 36 0.030
04_03_0660 + 18463011-18463322,18463424-18463516,18464500-184646... 30 1.9
09_06_0262 - 21921647-21922796,21922897-21923423 29 4.5
12_01_0109 + 853043-853426,853653-853787,853866-854138 28 5.9
07_03_1626 + 28223967-28225294,28225506-28225779,28225939-282262... 28 5.9
07_03_0123 - 13688562-13689146,13689233-13689583,13689665-136898... 28 7.8
05_03_0111 - 8512892-8512955,8513189-8513805 28 7.8
>05_06_0234 -
26602660-26602728,26602814-26602988,26603077-26603120,
26603204-26603381,26603468-26603652,26603737-26603801,
26603985-26604066,26604342-26604434,26605096-26605191,
26605312-26605355,26605467-26605530
Length = 364
Score = 57.2 bits (132), Expect = 1e-08
Identities = 27/55 (49%), Positives = 34/55 (61%)
Frame = +1
Query: 508 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQCLKTP*ASLLEFYFAPN 672
KG+P+FW N +N +LSE +QE DE LK L+DIK + P LEFYF N
Sbjct: 129 KGVPEFWLNAMKNHEILSEEIQERDEEALKYLKDIKWYRISEPKGFKLEFYFDTN 183
>06_01_0356 +
2557127-2557193,2557272-2557315,2557433-2557528,
2559259-2559351,2559450-2559540,2559617-2559678,
2559754-2559938,2560022-2560199,2560293-2560336,
2560440-2560635,2560728-2560745,2560955-2561005
Length = 374
Score = 54.4 bits (125), Expect = 8e-08
Identities = 25/58 (43%), Positives = 34/58 (58%)
Frame = +1
Query: 499 SQCKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQCLKTP*ASLLEFYFAPN 672
+ KG+PDFW + +LSE +QE DEP LK L+DIK + P L+F+F N
Sbjct: 129 ADAKGVPDFWLTAMKTNEVLSEEIQERDEPALKYLKDIKWARIDDPKGFKLDFFFDTN 186
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 174 HAEAMASLPPNVRRRIRALRTLQ 242
H + + +L PNVR+R+ LR +Q
Sbjct: 47 HTDVLEALSPNVRKRVEYLREIQ 69
>06_03_0740 -
24006485-24006629,24006821-24006864,24006954-24007122,
24007226-24007413,24007572-24007634,24007992-24008084,
24009837-24009932,24010024-24010067,24010184-24010357,
24010764-24010974
Length = 408
Score = 51.2 bits (117), Expect = 7e-07
Identities = 25/58 (43%), Positives = 34/58 (58%)
Frame = +1
Query: 499 SQCKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQCLKTP*ASLLEFYFAPN 672
S+ KG+PDFW N +N +L+E + E DE LK L+DIK + P EF+F N
Sbjct: 205 SKEKGVPDFWLNAMKNNEILAEEIHESDEEALKYLKDIKWCRIDDPKGFKFEFFFYTN 262
>01_06_0465 -
29573972-29574110,29574300-29574343,29574434-29574602,
29574707-29574894,29575081-29575145,29575257-29575311,
29575502-29575594,29576035-29576130,29576259-29576302,
29576419-29576431
Length = 301
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/55 (41%), Positives = 31/55 (56%)
Frame = +1
Query: 508 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQCLKTP*ASLLEFYFAPN 672
KG+PDFW +N +L+E + E DE LK L+DIK + P EF+F N
Sbjct: 103 KGVPDFWLKAMKNNEILAEEIHESDEEALKYLKDIKWCRIDDPKGFKFEFFFDTN 157
>04_04_0122 -
22918146-22918220,22918455-22918496,22918586-22918642,
22918784-22918844,22919219-22919280,22919372-22919485,
22919565-22919636,22919824-22919874,22919990-22920112,
22921261-22921383
Length = 259
Score = 37.5 bits (83), Expect = 0.010
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = +1
Query: 508 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKV 618
K IPDFW F + ML E++ E D+ I K L+ I V
Sbjct: 73 KQIPDFWLTAFLSHPMLGELLTEDDQKIFKHLESIDV 109
>02_04_0344 -
22171401-22171448,22171725-22171760,22171996-22172056,
22173246-22173304,22173384-22173497,22173575-22173646,
22173786-22173836,22173935-22174057,22175154-22175291
Length = 233
Score = 35.9 bits (79), Expect = 0.030
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +1
Query: 514 IPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKV 618
IPDFW F + +LSE++ E D+ + K L+ + V
Sbjct: 80 IPDFWLTAFLSHPLLSELLTEEDQKMFKYLESVDV 114
>04_03_0660 +
18463011-18463322,18463424-18463516,18464500-18464607,
18464892-18465044,18465256-18465354,18465443-18465571,
18465987-18466166,18466208-18466246,18466247-18466363,
18466445-18466609
Length = 464
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +1
Query: 505 CKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQCLKTP*ASLLEFYFAP 669
CK + + I +S LS++++ HDE + + L ++ +C+ P L F P
Sbjct: 321 CKQLDNSVVGIRSTISKLSQLLKRHDEELWRHL-EVVTKCISAPTLMLCIFQVNP 374
>09_06_0262 - 21921647-21922796,21922897-21923423
Length = 558
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +2
Query: 380 CLNPWRDDTEEEELARSVQNAAITEGEEKKDDKAIEPPM 496
CL+PW D E +V +AA GE D + E M
Sbjct: 300 CLSPWSDHRSSEYYNCNVYDAAKANGEASDDKRRREQGM 338
>12_01_0109 + 853043-853426,853653-853787,853866-854138
Length = 263
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 195 GMPSLLHEGDL*WPLSFHYGSRHFSTGVALVHHFXXXXXXLQTP 64
G+P L GD+ + L+F G+ H T VAL F Q+P
Sbjct: 129 GVPDLSEHGDV-YDLTFGLGADHPPTAVALRKEFQRIILYQQSP 171
>07_03_1626 +
28223967-28225294,28225506-28225779,28225939-28226230,
28226492-28226651,28226809-28226917,28227004-28227099
Length = 752
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = +2
Query: 398 DDTEEEELARSVQNAAITEGEEKKDDKAIEPPMDPNVRVSQTFGTTYSGMS 550
DD EEEE + V I EG + ++ +A P D F Y G S
Sbjct: 169 DDVEEEEEEQVVSRLDIFEGAKGREARAFLPDEDDEDDDVVVFDPEYDGYS 219
>07_03_0123 -
13688562-13689146,13689233-13689583,13689665-13689861,
13689954-13690072,13690103-13690245,13690332-13690544,
13690649-13690774,13690891-13691028,13691109-13691454,
13691532-13691798,13691939-13691983,13692148-13692349,
13692405-13692507,13692599-13692810,13692891-13693113,
13693211-13693291
Length = 1116
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 392 WRDDTEEEELARSVQNAAITEGEEKKDDKAIEPPMDPNVRV 514
WRD + + +A S+ +A ++ G D + P PN V
Sbjct: 124 WRDRNDSQYVAESMLHAHMSYGRGGVDVNGVPQPFQPNPNV 164
>05_03_0111 - 8512892-8512955,8513189-8513805
Length = 226
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +2
Query: 152 SGHHKSPSCRSDGIPTPECSSANPRLENSSIGVCHIEAKFYSE 280
S H P CR+D + ++A RL S G I KF +E
Sbjct: 182 SSHSTCPICRADVVDELAAAAAGGRLSLSPYGTELIHMKFITE 224
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,430,271
Number of Sequences: 37544
Number of extensions: 338241
Number of successful extensions: 907
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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