Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021212
(675 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 1e-09
SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.49
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 3.4
SB_16619| Best HMM Match : Dynamitin (HMM E-Value=1.1) 29 4.5
SB_14689| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_51137| Best HMM Match : Fibrinogen_C (HMM E-Value=0.23) 28 6.0
SB_49774| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0) 28 7.9
SB_1563| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_12927| Best HMM Match : ATP-synt_A (HMM E-Value=4.3) 28 7.9
>SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 340
Score = 60.5 bits (140), Expect = 1e-09
Identities = 32/67 (47%), Positives = 40/67 (59%), Gaps = 12/67 (17%)
Frame = +1
Query: 508 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKV------------QCLKTP*ASLL 651
KGIP+FW +NV +LSEM+QEHDEPILK L D++V TP +L
Sbjct: 238 KGIPEFWLTAMKNVELLSEMIQEHDEPILKHLHDVRVIFTGPESTNTTQYPQPTPMGFVL 297
Query: 652 EFYFAPN 672
EF+F PN
Sbjct: 298 EFHFTPN 304
Score = 46.0 bits (104), Expect = 3e-05
Identities = 24/68 (35%), Positives = 30/68 (44%)
Frame = +2
Query: 251 CHIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDECLNPWRDDTEEEELARS 430
C +E KFY EVHA R I +G EP D+EC W D E+E+ A
Sbjct: 143 CKLEGKFYEEVHALECKYAEKFKPFYEKRRNIASGGVEPTDEEC--RWPSDAEDEDEAEE 200
Query: 431 VQNAAITE 454
+ TE
Sbjct: 201 KEEKEATE 208
>SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1718
Score = 31.9 bits (69), Expect = 0.49
Identities = 19/76 (25%), Positives = 31/76 (40%)
Frame = +2
Query: 338 ALIVNGTYEPNDDECLNPWRDDTEEEELARSVQNAAITEGEEKKDDKAIEPPMDPNVRVS 517
A+I + P D + +D + + A A I+ ++KD +D NV +S
Sbjct: 247 AIISDSMRHPEDMSTMRETQDQKQTDPAANGSSEATISNDSDRKDANIRFSDIDKNVNIS 306
Query: 518 QTFGTTYSGMSQCSAK 565
+ G SQ S K
Sbjct: 307 DSQGENIHVDSQSSKK 322
>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 7381
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 305 HICIRVHVLHCKTWPQCDKLLLK 237
HI +RV V C+ P C+K LLK
Sbjct: 3390 HIALRVEVYGCRLGPLCNKPLLK 3412
>SB_16619| Best HMM Match : Dynamitin (HMM E-Value=1.1)
Length = 667
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 198 VGMPSLLHEGDL*WPLSFHYGSRHFSTGVALVH 100
V +PS +HE D PL F +GS + T + L H
Sbjct: 207 VPLPSSIHEADDMLPLCFEFGSLNSQTLLMLEH 239
>SB_14689| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1900
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +2
Query: 404 TEEEELARSVQNA--AITEGEEKKDDKAIEPPMDPNVRVSQTFGTTYSGMSQCSAK 565
TE E++ ++N + E EEK+D + PN+R+ + FG S S+ K
Sbjct: 1840 TEIEDIHTIIKNIHQMMKEREEKEDKETKSSDKKPNIRIGKPFGRPSSFGSKTDDK 1895
>SB_51137| Best HMM Match : Fibrinogen_C (HMM E-Value=0.23)
Length = 365
Score = 28.3 bits (60), Expect = 6.0
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 356 TYEPNDDECLNPWRDDTEEEEL 421
TYE D+ C +PW+D +++ E+
Sbjct: 268 TYERLDNSCTSPWQDVSQKSEV 289
>SB_49774| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 552
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 305 HICIRVHVLHCKTWPQCDKLLLK 237
HIC V +HCK+ QC LL K
Sbjct: 116 HICRDVDDIHCKSEAQCQALLNK 138
>SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 1283
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +2
Query: 362 EPNDDECLNPWRDDTEEEELARSVQNAAITEGEEKKDDKAI 484
E DD+ W DD E+E+ +N ++KK K I
Sbjct: 1118 EDEDDDIKESWDDDDEDEKKEDEAKNTEAAAPKKKKTLKQI 1158
>SB_1563| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 762
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +2
Query: 377 ECLNPWRDDTEEEELARSVQNAAITEGEEKKDDKA--IEPPMDPNVRVSQ 520
+ LN T+++ + + + ++ +EKKD+K +E +DP V VS+
Sbjct: 156 DSLNRQLMSTDDQNVVKKKEQSSKPLAQEKKDEKVTKMEVDLDPKVEVSK 205
>SB_12927| Best HMM Match : ATP-synt_A (HMM E-Value=4.3)
Length = 477
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -3
Query: 418 LFFFSVITPWVETFIIIRFICAIHNKSSLFIKRLVKFFIFAFECMYF 278
LFF +T +F + FI + F K + F++ F CMYF
Sbjct: 13 LFFLLFLTV---SFHVFMFIVVPYVTKRPFFKNIPAIFMYIFMCMYF 56
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,356,749
Number of Sequences: 59808
Number of extensions: 403672
Number of successful extensions: 1092
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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