Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021212
         (675 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical pr...    53   2e-07
Z46829-1|CAA86862.1|  375|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z49887-3|CAC70079.1|  639|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z49887-2|CAA90057.1|  625|Caenorhabditis elegans Hypothetical pr...    29   4.0  
AF068867-1|AAC35506.1|  639|Caenorhabditis elegans putative acti...    29   4.0  
AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical ...    27   9.2  

>U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical
           protein D2096.8 protein.
          Length = 316

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = +1

Query: 481 YRASNGS-QCKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQCLKTP*ASLLEF 657
           Y+A+      KGI DFW    R   +++E ++EHD PIL  L D+     K P    +EF
Sbjct: 101 YKAAEADPSAKGIKDFWLTALRTHDLVAEAIEEHDVPILSYLTDVTTAASKDPAGFKIEF 160

Query: 658 YFAPN 672
           +FA N
Sbjct: 161 HFATN 165



 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/66 (27%), Positives = 26/66 (39%)
 Frame = +2

Query: 227 LENSSIGVCHIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDECLNPWRDDT 406
           L+N  +    IE+ FY  VH                R  IV G  EP  ++   P  +  
Sbjct: 33  LKNLQMKTIQIESDFYKRVHELEIEFEGKFKSTFDQRKAIVAGEVEPTKEQIDTPILEGL 92

Query: 407 EEEELA 424
           E ++LA
Sbjct: 93  EGDQLA 98


>Z46829-1|CAA86862.1|  375|Caenorhabditis elegans Hypothetical
           protein T14B1.1 protein.
          Length = 375

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 386 NPWRDDTEEEELARSVQNAAITEGEEKKDDKAIEPPMD 499
           +P RD+  EE LA+ ++  A   GE+++ +   EP  D
Sbjct: 6   DPGRDEEVEEPLAKKIRVVAQEAGEDEESEMEKEPNAD 43


>Z49887-3|CAC70079.1|  639|Caenorhabditis elegans Hypothetical
           protein F09B9.2b protein.
          Length = 639

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -2

Query: 530 YQKSGIPLHWDPLEA-R*PCHPSFPH 456
           ++K  +PLHWDP  A R P     PH
Sbjct: 441 HKKQRLPLHWDPRNASRTPSGKKMPH 466


>Z49887-2|CAA90057.1|  625|Caenorhabditis elegans Hypothetical
           protein F09B9.2a protein.
          Length = 625

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -2

Query: 530 YQKSGIPLHWDPLEA-R*PCHPSFPH 456
           ++K  +PLHWDP  A R P     PH
Sbjct: 427 HKKQRLPLHWDPRNASRTPSGKKMPH 452


>AF068867-1|AAC35506.1|  639|Caenorhabditis elegans putative
           actin-binding proteinUNC-115 protein.
          Length = 639

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -2

Query: 530 YQKSGIPLHWDPLEA-R*PCHPSFPH 456
           ++K  +PLHWDP  A R P     PH
Sbjct: 441 HKKQRLPLHWDPRNASRTPSGKKMPH 466


>AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical
           protein Y73F8A.5 protein.
          Length = 1019

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = +2

Query: 170 PSCRSDGIPTP--ECSSANPRLENSSIGVCHIEAKFY 274
           PS      PTP   C   NP +E + +GVC    K Y
Sbjct: 356 PSATKLPPPTPWKTCPKCNPGMEKNKLGVCEFCKKDY 392


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,046,073
Number of Sequences: 27780
Number of extensions: 300937
Number of successful extensions: 949
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)