Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021212
         (675 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26110.1 68417.m03759 nucleosome assembly protein (NAP), puta...    48   4e-06
At2g19480.1 68415.m02277 nucleosome assembly protein (NAP), puta...    48   6e-06
At5g56950.1 68418.m07109 nucleosome assembly protein (NAP), puta...    45   4e-05
At1g18800.1 68414.m02343 nucleosome assembly protein (NAP) famil...    37   0.011
At3g13782.1 68416.m01740 nucleosome assembly protein (NAP) famil...    35   0.057
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he...    32   0.30 
At4g03620.1 68417.m00497 myosin heavy chain-related contains wea...    30   1.2  
At2g26530.1 68415.m03183 expressed protein                             30   1.6  
At5g40840.2 68418.m04959 cohesion family protein SYN2 (SYN2) ide...    29   3.8  
At5g40840.1 68418.m04958 cohesion family protein SYN2 (SYN2) ide...    29   3.8  

>At4g26110.1 68417.m03759 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 372

 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 23/55 (41%), Positives = 32/55 (58%)
 Frame = +1

Query: 508 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQCLKTP*ASLLEFYFAPN 672
           KG+P FW    +N  ++SE + E DE  LK L+DIK   ++ P    LEF+F  N
Sbjct: 125 KGVPSFWLTALKNNDVISEEVTERDEGALKYLKDIKWCKIEEPKGFKLEFFFDTN 179



 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 177 AEAMASLPPNVRRRIRALRTLQ*EFVTLRPSF 272
           ++ + +L PNVR+R+ ALR +Q +   L   F
Sbjct: 41  SDVLENLTPNVRKRVDALRDIQSQHDELEAKF 72


>At2g19480.1 68415.m02277 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 379

 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 23/55 (41%), Positives = 32/55 (58%)
 Frame = +1

Query: 508 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQCLKTP*ASLLEFYFAPN 672
           KG+PDFW    +N  + +E + E DE  LK L+DIK   ++ P    LEF+F  N
Sbjct: 124 KGVPDFWLIALKNNEITAEEITERDEGALKYLKDIKWSRVEEPKGFKLEFFFDQN 178


>At5g56950.1 68418.m07109 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 374

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 22/55 (40%), Positives = 31/55 (56%)
 Frame = +1

Query: 508 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQCLKTP*ASLLEFYFAPN 672
           KG+P FW    +N  ++SE + E DE  L  L+DIK   ++ P    LEF+F  N
Sbjct: 124 KGVPSFWLTALKNNDVISEEITERDEGALIYLKDIKWCKIEEPKGFKLEFFFDQN 178


>At1g18800.1 68414.m02343 nucleosome assembly protein (NAP) family
           protein similar to SP|Q01105|SET protein (HLA-DR
           associated protein II) (PHAPII) (Phosphatase 2A
           inhibitor I2PP2A) {Homo sapiens}; contains Pfam profile
           PF00956: Nucleosome assembly protein (NAP)
          Length = 256

 Score = 37.1 bits (82), Expect = 0.011
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +1

Query: 508 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQCLKTP*ASL-LEFYFAPN 672
           K IPDFW   F +   L E++ E D+ I K L  + V+  K   +   + F F PN
Sbjct: 71  KTIPDFWLTAFLSHPALGELLTEEDQKIFKYLSSLDVEDAKDVKSGYSITFSFNPN 126


>At3g13782.1 68416.m01740 nucleosome assembly protein (NAP) family
           protein similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 329

 Score = 34.7 bits (76), Expect = 0.057
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +1

Query: 508 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIK-VQCLKTP*ASLLEFYFAPN 672
           +G+P+FW    +   ML+  + E DE  LK L+DI+  +   T     LEF F  N
Sbjct: 126 EGVPNFWLIAMKTNEMLANEITERDEAALKYLKDIRSCRVEDTSRNFKLEFLFDSN 181


>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
           helicase, Mus musculus, PIR:I49731
          Length = 496

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +2

Query: 398 DDTEEEELARSVQNAAITEGEEKKDDKAIEPPMDPNVRVSQTFGTTYSGMSQ 553
           DD +EEE    + + +I E EEK D   +E P D N++   +  T Y+  S+
Sbjct: 43  DDDDEEEAVSELNSLSIKE-EEKPDS-ILEEPEDSNIKAVTSGDTPYTSASR 92


>At4g03620.1 68417.m00497 myosin heavy chain-related contains weak
           similarity to Swiss-Prot:P24733 myosin heavy chain,
           striated muscle [Aequipecten irradians]
          Length = 342

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +2

Query: 359 YEPND-DECLNPWRDDTEEEELARSVQNAAITEGEEKKDDKAIEPPMDPNV 508
           +E N+ +E ++ +R   + E+L + VQN A+   +EKK+D     P D NV
Sbjct: 199 HELNEMEELVSDFR--AQNEKLLKKVQNCAVEHNKEKKEDIDGPGPGDNNV 247


>At2g26530.1 68415.m03183 expressed protein
          Length = 317

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +3

Query: 246 EFVTLRPSFTVKYMHSNANMKNFTSLFMKSEXXXXXXXXXXXXXNVSTHGVMTLKKKS 419
           +F+  R +   +  H+  ++K FTSLF K E             +VS H    + KK+
Sbjct: 239 DFLLFRSASEGRARHNKDSVKTFTSLFRKQEDTKNSSSRGRGSSSVSAHEFHYMSKKA 296


>At5g40840.2 68418.m04959 cohesion family protein SYN2 (SYN2)
           identical to cohesion family protein SYN2 [Arabidopsis
           thaliana] GI:12006360; supporting cDNA
           gi|12006359|gb|AF281154.1|AF281154
          Length = 810

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 407 EEEELARSVQNAAITEGEEKKDDKAIEPPMDPNVRVSQ 520
           +  E +R  QNA+    + + DD  +EP M  ++R++Q
Sbjct: 217 DSNEPSRDHQNASRHREDPESDDILLEPQMSEDIRIAQ 254


>At5g40840.1 68418.m04958 cohesion family protein SYN2 (SYN2)
           identical to cohesion family protein SYN2 [Arabidopsis
           thaliana] GI:12006360; supporting cDNA
           gi|12006359|gb|AF281154.1|AF281154
          Length = 809

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 407 EEEELARSVQNAAITEGEEKKDDKAIEPPMDPNVRVSQ 520
           +  E +R  QNA+    + + DD  +EP M  ++R++Q
Sbjct: 217 DSNEPSRDHQNASRHREDPESDDILLEPQMSEDIRIAQ 254


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,073,030
Number of Sequences: 28952
Number of extensions: 272782
Number of successful extensions: 824
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)