Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021211
         (780 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    24   1.6  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    24   1.6  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        23   3.6  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   8.4  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    21   8.4  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +3

Query: 195 GKLL-FLGLDNAGKTTLLHML 254
           G+LL  LG   AGKTTLL+ L
Sbjct: 104 GELLAILGSSGAGKTTLLNTL 124


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +3

Query: 195 GKLL-FLGLDNAGKTTLLHML 254
           G+LL  LG   AGKTTLL+ L
Sbjct: 104 GELLAILGSSGAGKTTLLNTL 124


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -1

Query: 294 GCKVGTC*ASLSSSTCVRVLSSLHCQ 217
           GCK G C   ++S T     S+L  Q
Sbjct: 139 GCKKGVCTMEINSDTMCVTFSNLGIQ 164


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 761 ICSYVDEA**RGCNA 717
           ICS+ DEA  +GC++
Sbjct: 150 ICSWPDEAKKKGCSS 164


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 354 CPPRSNVVKRILP 316
           CPP+   +KR+LP
Sbjct: 53  CPPQGVDLKRVLP 65


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,909
Number of Sequences: 336
Number of extensions: 3361
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21065107
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)