Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021211
         (780 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.4  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    24   1.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.6  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   7.4  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   7.4  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   7.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   7.4  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 419  DACDRPRLPESKAELDSL 472
            D  DRP L E++ ++DSL
Sbjct: 1877 DRSDRPELSEAECDIDSL 1894


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 419  DACDRPRLPESKAELDSL 472
            D  DRP L E++ ++DSL
Sbjct: 1873 DRSDRPELSEAECDIDSL 1890


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 530 NPVLPVKTNYVTFSICIS 583
           NP +   TNY  FS+ IS
Sbjct: 68  NPAMQTATNYYLFSLAIS 85


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 213 PETRACLTFSIDQEI 169
           P  R C+ F  DQE+
Sbjct: 340 PRARGCIIFGSDQEV 354


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = -3

Query: 64  LFVICYVVKWIISLANDYC 8
           +F+IC+V  + +++   YC
Sbjct: 280 VFLICWVPFFCVNIVTSYC 298


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -3

Query: 706 VLREPAEALAVALTLQHRAHEKAPAADRVARTLILFPFQWSA 581
           + R   +A A A+ L  RA +     +   R+ +  PFQW A
Sbjct: 188 IQRLSKKANARAVVLFTRAEDARGILEAARRSNLSQPFQWLA 229


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 5/21 (23%), Positives = 16/21 (76%)
 Frame = -3

Query: 64  LFVICYVVKWIISLANDYCDE 2
           +F+IC++  ++++L + +C +
Sbjct: 343 VFIICWLPFFVVNLWSGFCSQ 363


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -3

Query: 706 VLREPAEALAVALTLQHRAHEKAPAADRVARTLILFPFQWSA 581
           + R   +A A A+ L  RA +     +   R+ +  PFQW A
Sbjct: 278 IQRLSKKANARAVVLFTRAEDARGILEAARRSNLSQPFQWLA 319


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,897
Number of Sequences: 438
Number of extensions: 4296
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)