Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021210
         (705 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1; ...    58   2e-07
UniRef50_Q86QT4 Cluster: Putative uncharacterized protein; n=1; ...    50   7e-05
UniRef50_P25846 Cluster: MutS protein homolog 1; n=4; Saccharomy...    34   3.9  
UniRef50_Q8GR92 Cluster: Gli521; n=1; Mycoplasma mobile|Rep: Gli...    33   5.2  
UniRef50_Q8D2T9 Cluster: RecC protein; n=1; Wigglesworthia gloss...    33   5.2  
UniRef50_A0CX97 Cluster: Chromosome undetermined scaffold_3, who...    33   5.2  
UniRef50_A7QYV8 Cluster: Chromosome chr6 scaffold_256, whole gen...    33   6.8  

>UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 77

 Score = 58.0 bits (134), Expect = 2e-07
 Identities = 33/67 (49%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
 Frame = +2

Query: 389 TE*IQFHIYLKLADP*DFVAPQSIYKRPKILYKINLIQTKESVRRGDTQR-KNKIVIFI* 565
           TE  Q    + LADP DFV PQSI KRPK LYKINL QTK   + GDT + K     ++ 
Sbjct: 11  TELSQILFMIILADPADFVVPQSINKRPKHLYKINLKQTKGIRQTGDTSKEKQNCYFYLI 70

Query: 566 FRVFSYL 586
            R+F ++
Sbjct: 71  PRIFIFI 77



 Score = 48.8 bits (111), Expect = 1e-04
 Identities = 23/32 (71%), Positives = 23/32 (71%)
 Frame = +1

Query: 493 LNTNKRICPTGGHSKEKQNCYFYLIPSIFIFI 588
           L   K I  TG  SKEKQNCYFYLIP IFIFI
Sbjct: 46  LKQTKGIRQTGDTSKEKQNCYFYLIPRIFIFI 77


>UniRef50_Q86QT4 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 47

 Score = 49.6 bits (113), Expect = 7e-05
 Identities = 23/26 (88%), Positives = 23/26 (88%)
 Frame = -2

Query: 671 LKLENGWTDLANFGLELFVEVQRRFK 594
           LKLENGWTDLANFGLEL VEVQR  K
Sbjct: 20  LKLENGWTDLANFGLELPVEVQRGLK 45


>UniRef50_P25846 Cluster: MutS protein homolog 1; n=4;
           Saccharomycetaceae|Rep: MutS protein homolog 1 -
           Saccharomyces cerevisiae (Baker's yeast)
          Length = 959

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 14/45 (31%), Positives = 31/45 (68%)
 Frame = +1

Query: 553 YFYLIPSIFIFIYFLNLLWTSTNNSRPKLAKSVQPFSSLSETNEQ 687
           +F+ +P+ F  I  ++L ++ST+ ++PK++K    F+ +SE+N +
Sbjct: 3   HFFRLPTAFRPISRVSLRYSSTDTAQPKISKLKISFNKISESNSE 47


>UniRef50_Q8GR92 Cluster: Gli521; n=1; Mycoplasma mobile|Rep: Gli521 -
            Mycoplasma mobile
          Length = 4727

 Score = 33.5 bits (73), Expect = 5.2
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = +1

Query: 199  EEDTVIEISCKMRLINILDLNNKRKIGVKSSNSLLHTISSDILYNNASF 345
            EE   +EI+  ++L  ILD N    I +  +N  ++   SDIL  N+SF
Sbjct: 3109 EEFVNVEIASTVKLALILDANLLTNINLSGNNKFINIDGSDILNPNSSF 3157


>UniRef50_Q8D2T9 Cluster: RecC protein; n=1; Wigglesworthia
           glossinidia endosymbiont of Glossina brevipalpis|Rep:
           RecC protein - Wigglesworthia glossinidia brevipalpis
          Length = 1083

 Score = 33.5 bits (73), Expect = 5.2
 Identities = 17/35 (48%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
 Frame = +1

Query: 232 MRLINILDLNNKRKIGVK-SSNSLLHTISSDILYN 333
           ++L+N L+ N + KI  K   ++LLHTI +DILYN
Sbjct: 286 LKLLNNLNENIENKIFYKPKKDNLLHTIQNDILYN 320


>UniRef50_A0CX97 Cluster: Chromosome undetermined scaffold_3, whole
            genome shotgun sequence; n=2; Oligohymenophorea|Rep:
            Chromosome undetermined scaffold_3, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 2724

 Score = 33.5 bits (73), Expect = 5.2
 Identities = 13/44 (29%), Positives = 27/44 (61%)
 Frame = +1

Query: 211  VIEISCKMRLINILDLNNKRKIGVKSSNSLLHTISSDILYNNAS 342
            +I I+CK   + I+++N+ +     +SNS +  IS+ I++ N +
Sbjct: 1460 LIYINCKTGYVEIINMNSFQNAATNTSNSFIQIISNTIVFTNTT 1503


>UniRef50_A7QYV8 Cluster: Chromosome chr6 scaffold_256, whole genome
           shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
           chr6 scaffold_256, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 169

 Score = 33.1 bits (72), Expect = 6.8
 Identities = 12/32 (37%), Positives = 24/32 (75%)
 Frame = +1

Query: 193 EEEEDTVIEISCKMRLINILDLNNKRKIGVKS 288
           E E++TV++ +C+ +LIN+  ++ KR  G+K+
Sbjct: 112 ESEKETVVDHTCQSQLINLSRISRKRNTGLKN 143


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 582,417,750
Number of Sequences: 1657284
Number of extensions: 10494540
Number of successful extensions: 26219
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 25106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26194
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56198352344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)