Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021210
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         27   2.6  
SPAC17G6.15c |||MTC tricarboxylate transporter|Schizosaccharomyc...    25   8.0  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   8.0  

>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -2

Query: 506 LFVLSLFYTKF*VFYISIEALRSLTGQLVLNKYEIEFIL 390
           +F L L +T+  +FY+S+  L     +++ N + I FI+
Sbjct: 321 IFTLLLTFTQLTIFYLSLNCLIENPYRMLRNTFPIWFIM 359


>SPAC17G6.15c |||MTC tricarboxylate transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -2

Query: 530 CPPVGQILLFVLSLF 486
           CPP+G + ++V+ LF
Sbjct: 3   CPPIGDVFVYVILLF 17


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +1

Query: 622 NSRPKLAKSVQPFSSLSETNEQ*FIF 699
           N+ P+L +S++P+ S+ + + Q FIF
Sbjct: 917 NAFPQLVRSLKPYISVLKQDHQEFIF 942


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,529,451
Number of Sequences: 5004
Number of extensions: 48164
Number of successful extensions: 110
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)