Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021210
         (705 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0868 - 21171425-21171826                                         29   4.8  
11_06_0683 + 26259129-26259968                                         28   6.3  
02_01_0194 + 1314181-1314661,1315656-1315723,1315834-1315965,131...    28   6.3  
01_02_0067 - 10800385-10800443,10800539-10800586,10801255-108013...    28   6.3  
09_06_0052 - 20510441-20510590,20510692-20511058,20511183-20511664     28   8.3  

>10_08_0868 - 21171425-21171826
          Length = 133

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 159 P*PSVMRKPTQGGGGGYCNRNKLQ 230
           P P   R PT GGG G C R+ L+
Sbjct: 33  PKPPAPRPPTPGGGAGSCPRDALK 56


>11_06_0683 + 26259129-26259968
          Length = 279

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
 Frame = -3

Query: 214 LQYPPPPPCVGFLITE---GHGHVH 149
           L  PPPPPC G+ +      HGH H
Sbjct: 219 LSPPPPPPCYGYHLHYCHCTHGHCH 243


>02_01_0194 +
           1314181-1314661,1315656-1315723,1315834-1315965,
           1317581-1317742,1318288-1318611
          Length = 388

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 205 PPPPPCVGFLITEG 164
           PPPPP +GF I+ G
Sbjct: 309 PPPPPAIGFTISSG 322


>01_02_0067 -
           10800385-10800443,10800539-10800586,10801255-10801354,
           10801600-10801831,10802130-10802269
          Length = 192

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 69  TLKTFFGLYMYLLHHSMVLFLPE 1
           TL + +G +MY +HH  V  LPE
Sbjct: 63  TLFSAYGCFMYSMHHRHVTMLPE 85


>09_06_0052 - 20510441-20510590,20510692-20511058,20511183-20511664
          Length = 332

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 523 GGHSKEKQNCYFYLIPSIFIFIYFLNLLWTSTNNSRPKLAK 645
           GG S  K    F+ +P  F F+Y+ NL + S +   P L +
Sbjct: 187 GGRSVVKSEYDFFYVPIDFKFVYYSNLGFLSFHLVLPDLTR 227


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,855,131
Number of Sequences: 37544
Number of extensions: 265523
Number of successful extensions: 932
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)