Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021210
         (705 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   0.53 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    24   1.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    24   1.6  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              22   6.5  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   8.6  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +1

Query: 559 YLIPSIFIFIYFLNLLWTSTNNSRPKLAKSV 651
           Y+IP++ + +  L +LW  + ++   +A SV
Sbjct: 259 YVIPAVTMMLLTLTVLWLDSRSTERMIAASV 289


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 559 YLIPSIFIFIYFLNLLWTSTNNSR 630
           Y+IP IFI +++  LL +  N+ +
Sbjct: 229 YVIPLIFIILFYSRLLSSIRNHEK 252


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 559 YLIPSIFIFIYFLNLLWTSTNNSR 630
           Y+IP IFI +++  LL +  N+ +
Sbjct: 229 YVIPLIFIILFYSRLLSSIRNHEK 252


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/42 (21%), Positives = 20/42 (47%)
 Frame = +1

Query: 196 EEEDTVIEISCKMRLINILDLNNKRKIGVKSSNSLLHTISSD 321
           E+E+    + C M+  N++D N       K++  ++  +  D
Sbjct: 55  EDENVQSYVECMMKKFNVVDENG--NFNEKNTRDIVQAVLDD 94


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = +1

Query: 556 FYLIPSIFIFIYFLNL 603
           F+LIP +FI + ++ +
Sbjct: 213 FFLIPMVFIAVLYIRI 228


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,317
Number of Sequences: 438
Number of extensions: 3509
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)