Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021210
         (705 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26910.1 68415.m03228 ABC transporter family protein similar ...    28   5.2  
At1g57610.2 68414.m06538 expressed protein contains Pfam domain,...    27   9.2  
At1g57610.1 68414.m06537 expressed protein contains Pfam domain,...    27   9.2  

>At2g26910.1 68415.m03228 ABC transporter family protein similar to
           PDR5-like ABC transporter GI:1514643 from [Spirodela
           polyrhiza]
          Length = 1420

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +2

Query: 287 VAIVSYIQLAVISYTTMLLFCNNVYHH 367
           + +  ++QL +++  TM +FC    HH
Sbjct: 505 IYVFKFVQLLLVALITMTVFCRTTMHH 531


>At1g57610.2 68414.m06538 expressed protein contains Pfam domain,
           PF04678: Protein of unknown function, DUF607
          Length = 293

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = +1

Query: 181 NRRKEEEED-TVIEISCKMRLINILDLNNKRKIGVKSSNSLLHT 309
           ++ ++E++D TV+E    MRL+N+ D+  K+ IG+     + +T
Sbjct: 37  SKEEDEKKDMTVLEAKKLMRLVNVEDM-KKKLIGMGDKEMVTYT 79


>At1g57610.1 68414.m06537 expressed protein contains Pfam domain,
           PF04678: Protein of unknown function, DUF607
          Length = 293

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = +1

Query: 181 NRRKEEEED-TVIEISCKMRLINILDLNNKRKIGVKSSNSLLHT 309
           ++ ++E++D TV+E    MRL+N+ D+  K+ IG+     + +T
Sbjct: 37  SKEEDEKKDMTVLEAKKLMRLVNVEDM-KKKLIGMGDKEMVTYT 79


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,603,356
Number of Sequences: 28952
Number of extensions: 233305
Number of successful extensions: 628
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)