Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021209
(758 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 97 2e-21
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po... 36 0.006
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar... 27 3.8
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo... 26 5.1
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 25 8.9
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 25 8.9
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom... 25 8.9
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 25 8.9
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni... 25 8.9
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 97.5 bits (232), Expect = 2e-21
Identities = 41/82 (50%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Frame = +1
Query: 259 ELRDVGFQTIDGKDVQXXXXXXXXXXNDPKKNTVCIYGHLDVQPALKSDGWETEPFEL-V 435
E RD+G+ +DG+DV NDP K TV IY H DVQPA DGW T+PF L V
Sbjct: 59 EKRDIGYHQMDGQDVPLPPIVLGQYGNDPSKKTVLIYNHFDVQPASLEDGWSTDPFTLTV 118
Query: 436 ERNEKLYGRGSTDDKGPVLGWL 501
+ +++GRG+TDDKGP++GW+
Sbjct: 119 DNKGRMFGRGATDDKGPLIGWI 140
Score = 57.6 bits (133), Expect = 2e-09
Identities = 23/44 (52%), Positives = 30/44 (68%)
Frame = +2
Query: 614 KLKPEGFLDSVDYVCISDNYWLGTTKPCITYGLRGISYYFLEVE 745
+ + E + D VCISD YWLGT KP +TYGLRG+ Y+ + VE
Sbjct: 177 RAEAEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVE 220
Score = 41.9 bits (94), Expect = 1e-04
Identities = 18/55 (32%), Positives = 33/55 (60%)
Frame = +2
Query: 89 TLPEIFKYVDQNKDSYKQLLKEAVAIPSVSCDVKYRADCIRMVHWMQDKLKEVGA 253
+L ++++ +D+ KD + L AV+IPSVS DV R + M ++ + ++GA
Sbjct: 2 SLDKLYEVIDKKKDEFVTRLSRAVSIPSVSADVTLRPKVVEMADFVVSEFTKLGA 56
Score = 38.3 bits (85), Expect = 0.001
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +3
Query: 492 WLAAYHNAYKGTGAELPVNLKFIFECMEESGSEGL 596
W++A A+K G + PVNL FE MEE GSEGL
Sbjct: 139 WISAIE-AHKELGIDFPVNLLMCFEGMEEYGSEGL 172
>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 596
Score = 35.9 bits (79), Expect = 0.006
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +1
Query: 364 IYGHLDVQPALKS--DGWETEPFELVERNEKLYGRGSTDDKGPVLGWL 501
+ GH DV P ++ D W PF N +Y RG+ DDK V+ L
Sbjct: 194 LMGHQDVVPVNQASLDRWYFPPFSATYHNGHVYSRGAADDKNSVVAIL 241
>SPBC19C7.08c |||leucine carboxyl
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 681
Score = 26.6 bits (56), Expect = 3.8
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -2
Query: 391 QVVHPNDHRYKLYFFLDHYPIRLLKLAAVERLCHLLFESQHPLTLY 254
++V P D + YFFL HY I+ V + + L ES P Y
Sbjct: 295 EMVEPFDEWEEFYFFLQHYSIQHASSKLVGK--YDLVESPDPCMQY 338
>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 437
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 436 ERNEKLYGRGSTDDKGPVLGWLHTTMPIRAL 528
+R+EK Y + +GP ++ TT+P+R L
Sbjct: 55 DRHEKTYQKKGVQVEGPWQFYVLTTLPLRTL 85
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 380 MYNLH*NLMDGRLNLLN*LSAMKNYMEEVLLM 475
+YN + N RLN A+KNYMEE+ L+
Sbjct: 435 LYNFNGNANPSRLN-----PALKNYMEELKLL 461
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 448 FHCAQLVQKVQSPIHQISMQVVHPNDHR 365
FH + + + IH+I +Q VH DH+
Sbjct: 796 FHWSGDLINIADGIHEIKLQRVHSQDHQ 823
>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 592
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -1
Query: 461 LPYNFSLRSTSSKGSVSHPSDFNAGCTSK*P*IQTVFFF 345
L Y L ST+ + S+S S FN + + I+T+ FF
Sbjct: 406 LRYTNDLASTNKRFSLSEASSFNVWSSVRKRAIETIEFF 444
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 306 LNVFAIYCLKANIP*LCMAPTSFNLSCIQ 220
L++ I C + NIP + + P+ FN C Q
Sbjct: 48 LSIAIIQCHERNIPSIDLPPSFFNYVCEQ 76
>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +1
Query: 343 PKKNTVCIYGHLDVQPALKSDGWETEPFELVERNEKL 453
P + I DV+P LKS + P E R EKL
Sbjct: 311 PLLEFIAIMDIKDVRPVLKSYQGKNIPLEYARREEKL 347
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,422,232
Number of Sequences: 5004
Number of extensions: 74937
Number of successful extensions: 207
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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