Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021209
         (758 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0374 + 28381456-28381785,28382302-28382555,28382665-283827...    36   0.026
06_02_0117 - 12027116-12027401,12029770-12030149                       32   0.57 
10_01_0179 + 2034261-2035102,2035215-2035864,2036156-2037234           28   7.0  

>02_05_0374 +
           28381456-28381785,28382302-28382555,28382665-28382773,
           28383272-28383410,28383525-28383582,28384179-28384196,
           28384301-28384423,28384483-28384681,28384763-28384796,
           28385044-28385153
          Length = 457

 Score = 36.3 bits (80), Expect = 0.026
 Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = +1

Query: 373 HLDVQPALKSDGWETEPFELV---ERNEKLYGRGSTDDKGPV 489
           H+DV PA   D W+ +PF L    E  +KL GRG+TD  G V
Sbjct: 99  HMDVVPA-NPDEWDFDPFSLTFDSEDKDKLRGRGTTDCLGHV 139


>06_02_0117 - 12027116-12027401,12029770-12030149
          Length = 221

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 30/92 (32%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
 Frame = +1

Query: 214 GSLDARQIEGSRSHTELRD--VGFQTIDGKDVQXXXXXXXXXXNDPKKNTVCIYGHLDVQ 387
           G+ DAR   G+    +LR   +G     G+  Q           DPK  T  IY  +D  
Sbjct: 94  GATDARDASGALGVEQLRRRCLGGGAPRGRHRQRREAVPRREEKDPKTATTHIYATIDAI 153

Query: 388 PALKSDGWETEPFELVERNEKLYGRGSTDDKG 483
           PAL  DG     F L++  +K Y    TDD G
Sbjct: 154 PAL-FDG-----FPLLKGVDKPYCFEDTDDGG 179


>10_01_0179 + 2034261-2035102,2035215-2035864,2036156-2037234
          Length = 856

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 151 RSSSHSIRFM*CEISCGLHPYGSLDARQIEGSRSHTELRDVGFQTID 291
           R   HS+R     +   LH Y SL+   I+     TELR++ +   D
Sbjct: 34  RREIHSLRSELSNMQAALHKYASLEDPDIQVKAWITELRELAYDIED 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,209,564
Number of Sequences: 37544
Number of extensions: 445990
Number of successful extensions: 1023
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)