Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021209
         (758 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59218| Best HMM Match : M20_dimer (HMM E-Value=2)                   75   6e-14
SB_9197| Best HMM Match : ITAM (HMM E-Value=4.2)                       40   0.002
SB_39672| Best HMM Match : Peptidase_M20 (HMM E-Value=9.9e-09)         33   0.25 
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_28679| Best HMM Match : RVT_1 (HMM E-Value=9.3e-08)                 29   3.1  
SB_56221| Best HMM Match : AOX (HMM E-Value=3.6)                       29   4.1  
SB_13055| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_55307| Best HMM Match : HEAT (HMM E-Value=2.4e-11)                  29   5.4  
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)               28   9.5  
SB_6120| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.5  

>SB_59218| Best HMM Match : M20_dimer (HMM E-Value=2)
          Length = 233

 Score = 74.9 bits (176), Expect = 6e-14
 Identities = 30/36 (83%), Positives = 32/36 (88%)
 Frame = +2

Query: 644 VDYVCISDNYWLGTTKPCITYGLRGISYYFLEVECA 751
           VDYVCISDNYWLG  KPCITYGLRGI Y+F+EV CA
Sbjct: 137 VDYVCISDNYWLGKEKPCITYGLRGICYFFVEVSCA 172



 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/47 (34%), Positives = 30/47 (63%)
 Frame = +2

Query: 101 IFKYVDQNKDSYKQLLKEAVAIPSVSCDVKYRADCIRMVHWMQDKLK 241
           IF +V  +++ Y + L +AVAI SVS   + R +  +MV+ + +K++
Sbjct: 36  IFVFV-YSQELYIKRLADAVAIKSVSAWPETRGEITKMVNHVAEKIR 81


>SB_9197| Best HMM Match : ITAM (HMM E-Value=4.2)
          Length = 75

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +1

Query: 349 KNTVCIYGHLDVQPALKSDGWET--EPFELVERNEKLYGRGSTDDKGPVLGWLHTTMPIR 522
           ++TV +YGHLD QP  +  GW     P+     + KLYGRG  DD   V   L   M + 
Sbjct: 15  RDTVLLYGHLDKQP--EFSGWRAGLGPWTPKYEDGKLYGRGGADDGYAVYASLTAIMALE 72

Query: 523 ALV 531
            ++
Sbjct: 73  GIL 75


>SB_39672| Best HMM Match : Peptidase_M20 (HMM E-Value=9.9e-09)
          Length = 702

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = +1

Query: 364 IYGHLDVQPALKSDGWETEPFELVERNEKLYGRGSTDDKGPVLGWLHTTMPIRAL 528
           I  HLDV PA  S  W+  PF+   ++  ++GRG+ D K  V+  L     +  L
Sbjct: 464 IASHLDVVPAPGS--WDVPPFDGRVKDGYIWGRGTLDVKNGVMASLEAVQALLKL 516


>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1011

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 31/105 (29%), Positives = 40/105 (38%), Gaps = 1/105 (0%)
 Frame = -1

Query: 500  SQPSTGPLSSVEPLPYNFSLRSTSSKGSVSHPSDFNAGCTSK*P*IQTVFFFGSLPNTPT 321
            S PST    +    P   S+ ST S  S   PS  +   T   P   +     S P+TP 
Sbjct: 818  STPSTPCTPNTPSTPSTPSMPSTPSTPST--PSTPSTPSTPSAPSTPSTPSTPSTPSTPK 875

Query: 320  KTGGS*T-SLPSIV*KPTSLNSVWLRLPSICLASSEPYGCNPHDI 189
                  T + PS   K TSL         +     EP+ CNP D+
Sbjct: 876  TPSTPCTPNTPSTNRKSTSLGMQENIANFLNACQEEPFNCNPQDL 920


>SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2529

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +2

Query: 2    KQLVPFFPAYHQHYSV-SSKQVSAKMATEKTLPEIFKYVDQNKDSYKQLLKEAVAIPSVS 178
            K  VP   A  + + V SSK VS + AT  TLPE+ + +D   D+  + +   + I S  
Sbjct: 1665 KSSVPLLAALRRCFVVASSKDVSPRRATTVTLPEL-RAMDDLADAADRRVAHVLPIASSE 1723

Query: 179  CD 184
             D
Sbjct: 1724 SD 1725


>SB_28679| Best HMM Match : RVT_1 (HMM E-Value=9.3e-08)
          Length = 948

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = +2

Query: 95  PEIFKYVDQNKDSYKQLLKEAVAIPSVSCDVKYRA--DCIRMVHWMQDKLKEVGAIQS*G 268
           P +F  +  N    + + +  +   + S D+K+ A  DC+  +H  +D L E+G ++   
Sbjct: 661 PPVFDPIMVNNTELECVSQAKILGVTFSSDLKWNAHMDCLAFIHSPEDLLMELGVVKRGD 720

Query: 269 MLAFK 283
           + A K
Sbjct: 721 IYALK 725


>SB_56221| Best HMM Match : AOX (HMM E-Value=3.6)
          Length = 361

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = +2

Query: 44  SVSSKQVSAKMATEKTLPEIFKYVDQNKDSYKQLLKEAVAIPSVSCD 184
           S SSK VS++ AT  TLPE+ + +D   D+  + +  A+ I S   D
Sbjct: 18  SRSSKDVSSRRATTVTLPEL-RAMDDLADAADRRVAHALPIASSESD 63


>SB_13055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1140

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -1

Query: 545  DRQLSTSALI-GIVVCSQPSTGPLSSV 468
            DR+L TS ++   V+CS P TG LSS+
Sbjct: 965  DRRLMTSLMVLHTVMCSAPMTGQLSSI 991


>SB_55307| Best HMM Match : HEAT (HMM E-Value=2.4e-11)
          Length = 1552

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +1

Query: 379  DVQPALKSDGWETEPFELVERNEKLYGRGSTDDKGPVLGWLHTTMPIRALV 531
            D++P +K D    + +E +  +E+ Y   S  DK   L WL    PI+  V
Sbjct: 884  DIEPKVKGDILYKQVYEYLNLDEREYFGLSYYDKSDNLFWLDQLKPIKKQV 934


>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
          Length = 1079

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = -1

Query: 533 STSALIGIVVCSQPSTGPLSSVEPLPYNFSLRSTSSKGSVSHPS 402
           STSA   +VV + PST P+    P  +  SL + +S  ++S PS
Sbjct: 213 STSAASSVVVAATPSTSPV----PATFVPSLPTVASASTLSAPS 252


>SB_6120| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 84

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = +2

Query: 11  VPFFPAYHQHYSVSSKQVSAKMATEKTLPEIFKYVDQNKDSYKQLLKEAVAIPSVSCD 184
           +P  P+     S SSK VS + AT  TLPE+ + +D   D+  + +   + I S   D
Sbjct: 8   IPCRPSDVASSSRSSKDVSPRRATTVTLPEL-RAMDDLADAADRRVAHVLPIASSESD 64


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,785,160
Number of Sequences: 59808
Number of extensions: 523437
Number of successful extensions: 1319
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1317
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)