Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021209
         (758 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    34   0.005
AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific tran...    27   0.83 
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    26   1.1  
M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles ...    23   7.7  
AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein pr...    23   7.7  

>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
            differentiation regulator protein.
          Length = 1283

 Score = 33.9 bits (74), Expect = 0.005
 Identities = 37/119 (31%), Positives = 47/119 (39%), Gaps = 10/119 (8%)
 Frame = -1

Query: 509  VVCSQPSTGP-LSSVEP-----LPYNFSLRSTSSKGSVSHPSDFNAGCTS-K*P*IQTVF 351
            VV S P+ G  L+S  P      P+   L  TSSK + +HPS   A   S   P + T  
Sbjct: 703  VVSSSPTGGHHLASPSPHHHLTSPHGAPLALTSSKSASTHPSPHPATRASPSSPIVATSS 762

Query: 350  FFGSLPNTPTKTGGS---*TSLPSIV*KPTSLNSVWLRLPSICLASSEPYGCNPHDISH 183
              G   NTP          T+       P SL+S     P   L+S  P G   H + H
Sbjct: 763  SGGGGSNTPNSAAAPHPYYTAAAMAAASPLSLSSKAPPHPHSALSSHSPVGAGSHHLHH 821


>AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific
           transcription factor FRU-MA protein.
          Length = 960

 Score = 26.6 bits (56), Expect = 0.83
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 230 LASSEPYGCNPHDISHH 180
           LAS  PYG   H +SHH
Sbjct: 696 LASGSPYGGGGHHLSHH 712


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 29   YHQHYSVSSKQVSAKMATEKTLPEIFKYVDQNKDSYKQL 145
            YHQ   +  +    K+  +K   EI K  ++NKD Y ++
Sbjct: 891  YHQRDKLLKQNDELKLEIKKKENEITKVRNENKDGYDRI 929


>M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 574

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = -1

Query: 551 QIDRQLSTSALIGIVVCSQPSTGPLSSVEPLP 456
           Q DR +  S L   V   QPS  P     PLP
Sbjct: 178 QRDRDVLNSLLAAKVGGGQPSASPRQPPTPLP 209


>AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein
           protein.
          Length = 942

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +2

Query: 131 SYKQLLKEAVAIPSVSCDVKYRADCIRMVHWMQDKLKEVG 250
           S+    ++ V + S   +    A+  R + W+Q  +K+VG
Sbjct: 814 SWSARKQQCVTLSSTEAEYVALAEACRELLWLQKLMKDVG 853


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 861,601
Number of Sequences: 2352
Number of extensions: 18497
Number of successful extensions: 37
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 78586767
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)