Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021209
         (758 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93386-5|CAB07646.1|  473|Caenorhabditis elegans Hypothetical pr...   110   9e-25
AC024859-4|AAK29983.4|  472|Caenorhabditis elegans Hypothetical ...    93   2e-19
Z92829-11|CAE17737.1|  257|Caenorhabditis elegans Hypothetical p...    33   0.22 
Z68214-4|CAA92447.1|  397|Caenorhabditis elegans Hypothetical pr...    30   2.1  
AC024881-9|AAK71410.1|  588|Caenorhabditis elegans Hypothetical ...    30   2.1  
Z68214-5|CAA92446.2|  397|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z68214-3|CAA92445.1|  399|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z66521-11|CAA91398.2|  471|Caenorhabditis elegans Hypothetical p...    29   4.7  
AB031233-1|BAA92262.1|  605|Caenorhabditis elegans kinesin like ...    29   4.7  
AF067945-16|AAC17675.1|  341|Caenorhabditis elegans Serpentine r...    28   8.3  

>Z93386-5|CAB07646.1|  473|Caenorhabditis elegans Hypothetical
           protein R11H6.1 protein.
          Length = 473

 Score =  110 bits (265), Expect = 9e-25
 Identities = 48/82 (58%), Positives = 60/82 (73%)
 Frame = +1

Query: 259 ELRDVGFQTIDGKDVQXXXXXXXXXXNDPKKNTVCIYGHLDVQPALKSDGWETEPFELVE 438
           EL D+G Q ++GK V+          +D  K T+ +YGHLDVQPA KSDGW+TEPFELVE
Sbjct: 61  ELADLGTQELEGKTVKLPPVLLGTLGSDKNKKTLLVYGHLDVQPAAKSDGWDTEPFELVE 120

Query: 439 RNEKLYGRGSTDDKGPVLGWLH 504
           ++ KL+GRGS+DDKGPVL W H
Sbjct: 121 KDGKLFGRGSSDDKGPVLCWFH 142



 Score = 67.7 bits (158), Expect = 8e-12
 Identities = 29/46 (63%), Positives = 38/46 (82%)
 Frame = +2

Query: 605 LMDKLKPEGFLDSVDYVCISDNYWLGTTKPCITYGLRGISYYFLEV 742
           L+++ K + FL  VD+VCISD+YWLGT KPC+TYGLRGI  +F+EV
Sbjct: 176 LLEREK-DRFLAGVDFVCISDSYWLGTKKPCLTYGLRGICSFFVEV 220



 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 28/55 (50%), Positives = 40/55 (72%)
 Frame = +2

Query: 92  LPEIFKYVDQNKDSYKQLLKEAVAIPSVSCDVKYRADCIRMVHWMQDKLKEVGAI 256
           L  +F+ +D + D+ K+LL+EAVAI SVS D   R + IRMVHWM++KL+ +G I
Sbjct: 5   LTNVFQQIDGDYDNLKELLREAVAIQSVSGDPSKRDETIRMVHWMKEKLETIGTI 59



 Score = 38.7 bits (86), Expect = 0.004
 Identities = 20/35 (57%), Positives = 22/35 (62%)
 Frame = +3

Query: 492 WLAAYHNAYKGTGAELPVNLKFIFECMEESGSEGL 596
           W  A   A K  G +LPVN+KF  E MEESGS GL
Sbjct: 140 WFHAIRAAQKN-GIDLPVNIKFCLEGMEESGSVGL 173


>AC024859-4|AAK29983.4|  472|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.11 protein.
          Length = 472

 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 44/92 (47%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
 Frame = +1

Query: 256 TELRDVGFQTI-DGKDVQXXXXXXXXXXNDPKKNTVCIYGHLDVQPALKSDGWETEPFEL 432
           T L ++G QT+  G+ +            D  K T+ IYGHLDVQPA K DGW T PFEL
Sbjct: 59  TSLWELGQQTLPSGEQLPLPPAVFGVYGRDKSKKTLLIYGHLDVQPAEKEDGWNTNPFEL 118

Query: 433 VERNEKLYGRGSTDDKGPVLGWLHTTMPIRAL 528
            E + KL+GRGSTDDKGPV+ W+     ++ L
Sbjct: 119 TEIDGKLFGRGSTDDKGPVIAWIAVLKVLQTL 150



 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 26/40 (65%), Positives = 32/40 (80%)
 Frame = +2

Query: 635 LDSVDYVCISDNYWLGTTKPCITYGLRGISYYFLEVECAK 754
           +  V + CISDNYWLG  KPC+TYGLRGI YYF+E+ CA+
Sbjct: 184 ISDVTFSCISDNYWLGRNKPCLTYGLRGICYYFVEISCAR 223



 Score = 58.0 bits (134), Expect = 7e-09
 Identities = 24/50 (48%), Positives = 35/50 (70%)
 Frame = +2

Query: 101 IFKYVDQNKDSYKQLLKEAVAIPSVSCDVKYRADCIRMVHWMQDKLKEVG 250
           +FK +D+ +D +  LL+E+VAI SVS D   R DC+RM  W +D+LK +G
Sbjct: 7   VFKSIDERQDEFIDLLRESVAIQSVSADPARRGDCVRMSEWARDQLKTLG 56



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 18/35 (51%), Positives = 24/35 (68%)
 Frame = +3

Query: 492 WLAAYHNAYKGTGAELPVNLKFIFECMEESGSEGL 596
           W+A      +  G +LP+N+KF+ ECMEES SEGL
Sbjct: 140 WIAVL-KVLQTLGIDLPINIKFVLECMEESSSEGL 173


>Z92829-11|CAE17737.1|  257|Caenorhabditis elegans Hypothetical
           protein F10A3.16 protein.
          Length = 257

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 698 YMASWFPTNSYRIYIHSL-HYQGIPQVSICPLISC 597
           Y   W+  + YR Y H L ++Q IP++S C +I C
Sbjct: 132 YSVLWY--SDYRKYFHQLQNFQAIPRISFCSIIVC 164


>Z68214-4|CAA92447.1|  397|Caenorhabditis elegans Hypothetical
           protein C10C5.4 protein.
          Length = 397

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 337 NDPKKNTVCIYGHLDVQPALKSDGWETEPFE-LVERNEKLYGRGSTDDK 480
           + P+  ++ +Y H DV P  + + W  +P+    + +  ++ RG+ D K
Sbjct: 63  SQPELPSIMLYSHTDVVPTFR-EHWTHDPYSAFKDEDGNIFARGAQDTK 110


>AC024881-9|AAK71410.1|  588|Caenorhabditis elegans Hypothetical
           protein Y97E10B.1 protein.
          Length = 588

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -1

Query: 287 IV*KPTSLNSVWLRLPSICLASSEPYGCNPHDISHHMKRMEW 162
           IV  P SLN  W+  P I     E Y  N + I+ H+K + W
Sbjct: 407 IVVDPRSLNYTWIHFPPILPNGLEKYEVNENVIT-HLKTIFW 447


>Z68214-5|CAA92446.2|  397|Caenorhabditis elegans Hypothetical
           protein C10C5.5 protein.
          Length = 397

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 337 NDPKKNTVCIYGHLDVQPALKSDGWETEPFE-LVERNEKLYGRGSTDDK 480
           + P+  ++ +Y H DV P  + + W  +P+    + +  ++ RG+ D K
Sbjct: 63  SQPELPSIMLYSHTDVVPTFR-EHWTHDPYSAFKDEDGNIFARGAQDMK 110


>Z68214-3|CAA92445.1|  399|Caenorhabditis elegans Hypothetical
           protein C10C5.3 protein.
          Length = 399

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 337 NDPKKNTVCIYGHLDVQPALKSDGWETEPFE-LVERNEKLYGRGSTDDK 480
           + P+  ++ +Y H DV P  + + W  +P+    + +  ++ RG+ D K
Sbjct: 63  SQPELPSIMLYSHTDVVPTFR-EHWTHDPYSAFKDEDGNIFARGAQDMK 110


>Z66521-11|CAA91398.2|  471|Caenorhabditis elegans Hypothetical
           protein W02B12.7 protein.
          Length = 471

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = +2

Query: 29  YHQHYSVSSKQVSAKMATEKTLPEIFKYVDQNKDSYKQLLKEAVAIPSVSC 181
           Y+ H +    Q++       T+P++   + + K+  K L +E+   PS SC
Sbjct: 11  YNNHTNDLKHQIAQLERKTATIPKLENQLHKAKNQNKVLRRESALFPSASC 61


>AB031233-1|BAA92262.1|  605|Caenorhabditis elegans kinesin like
           protein protein.
          Length = 605

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = +2

Query: 29  YHQHYSVSSKQVSAKMATEKTLPEIFKYVDQNKDSYKQLLKEAVAIPSVSC 181
           Y+ H +    Q++       T+P++   + + K+  K L +E+   PS SC
Sbjct: 145 YNNHTNDLKHQIAQLERKTATIPKLENQLHKAKNQNKVLRRESALFPSASC 195


>AF067945-16|AAC17675.1|  341|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 12 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 21  FLLIINIIQ*VPNKFLQKWQRKKH 92
           FL+I+N+   + N+FL+ W  KK+
Sbjct: 172 FLMILNLFALLTNQFLRTWNLKKY 195


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,718,871
Number of Sequences: 27780
Number of extensions: 409404
Number of successful extensions: 1072
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)