Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021209
         (758 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    27   0.25 
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    24   1.3  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    24   1.3  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    23   3.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.1  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   5.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   5.4  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 26.6 bits (56), Expect = 0.25
 Identities = 12/48 (25%), Positives = 27/48 (56%)
 Frame = +2

Query: 113 VDQNKDSYKQLLKEAVAIPSVSCDVKYRADCIRMVHWMQDKLKEVGAI 256
           VD+ K   ++L  +   +  + CD+  + D ++++ W++   K +GAI
Sbjct: 41  VDKMKTLVEELKSKPGKLVPLQCDLSNQNDILKVIEWVE---KNLGAI 85


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +3

Query: 516 YKGTGAELPVNLKFIFECMEESGSEGLTAY*WTN*NL--RDSLIV*TMYVYPIT 671
           + G     P +  +I+  +    S GLT   WTN N+  R  L   T++ Y IT
Sbjct: 163 WTGKNITTPWDYYYIYHTLVAEQSYGLTLPSWTN-NIFPRGELFDATVFTYNIT 215


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +3

Query: 516 YKGTGAELPVNLKFIFECMEESGSEGLTAY*WTN*NL--RDSLIV*TMYVYPIT 671
           + G     P +  +I+  +    S GLT   WTN N+  R  L   T++ Y IT
Sbjct: 178 WTGKNITTPWDYYYIYHTLVAEQSYGLTLPSWTN-NIFPRGELFDATVFTYNIT 230


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +3

Query: 516 YKGTGAELPVNLKFIFECMEESGSEGLTAY*WTN*NL--RDSLIV*TMYVYPIT 671
           + G     P +  +I+  +    S GLT   WTN N+  +  L   T++ Y IT
Sbjct: 66  WTGKNITTPWDYYYIYHTLVAEQSYGLTLPSWTN-NIFPKGELFDATVFTYNIT 118


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
          protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 19 FSCLSSTLFSEFQTSFCK 72
          F CL+ST+ SE   + CK
Sbjct: 15 FLCLASTILSESAGTSCK 32


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 671 YWLGTTKPCITYGLRGISYYFL 736
           YW+ +++  +   +RG  YYFL
Sbjct: 243 YWMSSSQYHMPKEIRGQLYYFL 264


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 671 YWLGTTKPCITYGLRGISYYFL 736
           YW+ +++  +   +RG  YYFL
Sbjct: 243 YWMSSSQYHMPKEIRGQLYYFL 264


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,811
Number of Sequences: 438
Number of extensions: 5025
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)