Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021209
         (758 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17830.1 68417.m02659 peptidase M20/M25/M40 family protein si...    37   0.017
At1g62570.1 68414.m07059 flavin-containing monooxygenase family ...    30   1.9  
At3g29375.1 68416.m03690 XH domain-containing protein contains P...    28   5.9  
At1g48540.2 68414.m05428 leucine-rich repeat family protein            28   5.9  
At1g48540.1 68414.m05427 leucine-rich repeat family protein            28   5.9  
At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pf...    28   7.7  
At4g38320.1 68417.m05416 expressed protein contains Pfam domain,...    28   7.7  
At4g37680.1 68417.m05329 expressed protein contains Pfam domain,...    28   7.7  

>At4g17830.1 68417.m02659 peptidase M20/M25/M40 family protein
           similar to acetylornithine deacetylase
           (Acetylornithinase, AO; N-acetylornithinase, NAO)
           [Dictyostelium discoideum] SWISS-PROT:P54638
          Length = 440

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 19/39 (48%), Positives = 23/39 (58%)
 Frame = +1

Query: 373 HLDVQPALKSDGWETEPFELVERNEKLYGRGSTDDKGPV 489
           H+DV  A   D WE +PF L    +KL GRG+TD  G V
Sbjct: 101 HMDVVTA-NPDDWEFDPFSLSIDGDKLRGRGTTDCLGHV 138


>At1g62570.1 68414.m07059 flavin-containing monooxygenase family
           protein / FMO family protein low similarity to
           flavin-containing monooxygenase FMO3 [Rattus norvegicus]
           GI:12006730; contains Pfam profile PF00743:
           Flavin-binding monooxygenase-like
          Length = 461

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/64 (29%), Positives = 33/64 (51%)
 Frame = +2

Query: 41  YSVSSKQVSAKMATEKTLPEIFKYVDQNKDSYKQLLKEAVAIPSVSCDVKYRADCIRMVH 220
           + V SK V+A ++   TLP + + +D  K SY+   +EA+ IP        ++ C   + 
Sbjct: 337 FEVQSKWVAAVLSGRVTLPSVDEMMDDLKLSYE--TQEALGIPKRYTHKLGKSQC-EYLD 393

Query: 221 WMQD 232
           W+ D
Sbjct: 394 WIAD 397


>At3g29375.1 68416.m03690 XH domain-containing protein contains Pfam
           profile: PF03469: XH domain
          Length = 335

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -1

Query: 359 TVFFFGSLPNTPTKTGGS*TSLPSIV*KPT-SLNSVWLRLPSICLASS 219
           T   FGS P+    TG S +SLPS     T + +SV    PS+ +ASS
Sbjct: 67  TSLLFGSSPSIFGATGSSPSSLPSSASTTTHATSSVTTTQPSLGVASS 114


>At1g48540.2 68414.m05428 leucine-rich repeat family protein 
          Length = 1051

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 638 DSVDYVCISDNYWLGT-TKPCITYGLRGISY 727
           DS + VCISDN+W  T ++ C +   R I +
Sbjct: 747 DSGEDVCISDNFWENTLSRVCSSSSNRSIKF 777


>At1g48540.1 68414.m05427 leucine-rich repeat family protein 
          Length = 1063

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 638 DSVDYVCISDNYWLGT-TKPCITYGLRGISY 727
           DS + VCISDN+W  T ++ C +   R I +
Sbjct: 747 DSGEDVCISDNFWENTLSRVCSSSSNRSIKF 777


>At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pfam
           PF00400: WD domain, G-beta repeat; similar to WD-repeat
           protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
           sapiens]
          Length = 709

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -1

Query: 581 RFLHTFENELQIDRQLS 531
           RF HT +N+LQ+DR +S
Sbjct: 471 RFYHTTDNQLQLDRDIS 487


>At4g38320.1 68417.m05416 expressed protein contains Pfam domain,
           PF03006: Uncharacterised protein family (Hly-III /
           UPF0073)
          Length = 374

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +1

Query: 409 WETEPFELVERNE-KLYGRGSTDDKGPVLGWLHTTMPIRALVLSCLSI*SSFSNVWRNLV 585
           W+   ++LVE +    Y R    D   ++G   +  PI+ ++LS  +I +   NVW +L+
Sbjct: 32  WQKVKYQLVEFHSLPAYLR----DNEYIIGHYRSEWPIKQILLSIFTIHNETLNVWTHLI 87


>At4g37680.1 68417.m05329 expressed protein contains Pfam domain,
           PF03006: Uncharacterised protein family (Hly-III /
           UPF0073)
          Length = 385

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +1

Query: 409 WETEPFELVERNE-KLYGRGSTDDKGPVLGWLHTTMPIRALVLSCLSI*SSFSNVWRNLV 585
           W+   ++LVE +    Y R    D   ++G   +  PI+ ++LS  +I +   NVW +L+
Sbjct: 32  WQKVKYQLVEFHSLPAYLR----DNEYIIGHYRSEWPIKQILLSIFTIHNETLNVWTHLI 87


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,573,595
Number of Sequences: 28952
Number of extensions: 375715
Number of successful extensions: 956
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)