Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021208
         (721 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   2.5  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   4.4  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   7.6  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   7.6  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   7.6  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   7.6  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    21   7.6  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    21   7.6  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 420 GVGVMGLPPLMSETISSASRLKSPSGRN 337
           GV V  +PP+ S+ I+   ++ SPS  N
Sbjct: 404 GVNVP-VPPMQSQIINPQPQITSPSNTN 430



 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 496  SPCVSQTKVASPVLQTTPKAMNGTK 570
            SPC +    AS     TP++ NG +
Sbjct: 929  SPCRNSASPASSDRSGTPRSTNGDR 953


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 198 AVVPPGRTTHVLSNAPNLKMHNHKKSLN 115
           A VPP    ++   +PN   H  K+S++
Sbjct: 101 AEVPPSNPIYIHPESPNFGAHWMKESIS 128


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 163 KYVCRSTRGHDRSVCLRLLQR 225
           K+  +  +G DR +C  LLQR
Sbjct: 570 KHYVQYDQGEDRWLCTLLLQR 590


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 163 KYVCRSTRGHDRSVCLRLLQR 225
           K+  +  +G DR +C  LLQR
Sbjct: 803 KHYVQYDQGEDRWLCTLLLQR 823


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 163 KYVCRSTRGHDRSVCLRLLQR 225
           K+  +  +G DR +C  LLQR
Sbjct: 803 KHYVQYDQGEDRWLCTLLLQR 823


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 402 LPPLMSETISSASRLKSPS 346
           +PP    T SS+S L+SP+
Sbjct: 214 IPPAEFPTTSSSSALESPN 232


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 402 LPPLMSETISSASRLKSPS 346
           +PP    T SS+S L+SP+
Sbjct: 3   IPPAEFPTTSSSSALESPN 21


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 402 LPPLMSETISSASRLKSPS 346
           +PP    T SS+S L+SP+
Sbjct: 3   IPPAEFPTTSSSSALESPN 21


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,638
Number of Sequences: 336
Number of extensions: 3502
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)