Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021208
(721 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 33 0.054
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 30 0.38
SPAC869.10c |||proline specific permease |Schizosaccharomyces po... 28 1.2
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 27 2.7
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc... 27 3.6
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa... 26 4.7
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 26 4.7
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 26 6.2
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 25 8.2
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 25 8.2
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 32.7 bits (71), Expect = 0.054
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Frame = +2
Query: 233 LLHFIPPLLSTVSDDMA--DNAVYNRQIST-ESGWDNPFRPDGDLSREADEIVSLIK 394
+++ P + TVS ++ + A+YN Q+S+ +S DN F D DLSR +VSL++
Sbjct: 499 IVNLPPKTIRTVSVNLLPEERALYNEQMSSAQSLVDNYFNNDHDLSRYGFLLVSLLR 555
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 29.9 bits (64), Expect = 0.38
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = -2
Query: 426 TGGVGVMGLPPLMSETISSASRLKSPSGRNGLSHPLSVLICLLYTALSAISSLT 265
+GG V LPP + E S+ + +K G HP L+ + T A + LT
Sbjct: 211 SGGKNVKALPPTLEEDNSTQNSIKELQESLGEDHPAGALVGVTKTLDQARAVLT 264
>SPAC869.10c |||proline specific permease |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 552
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -1
Query: 481 IRFSLFLLVFVSRQLWSRDRWSWSDGLAALD 389
I +FL+++V+ +LWSR+ WS+ + +D
Sbjct: 491 ITLPIFLVLYVAHKLWSRN-WSFGKRIEEID 520
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 27.1 bits (57), Expect = 2.7
Identities = 21/72 (29%), Positives = 31/72 (43%)
Frame = -2
Query: 402 LPPLMSETISSASRLKSPSGRNGLSHPLSVLICLLYTALSAISSLTVDSRGGIKCKSPAP 223
LPP+ T+ + S P R L + +L LS ISS D ++ KSP P
Sbjct: 373 LPPI--PTVQTTSSNVPPVNRPSLKSKSPSVSNILSNQLSPISSANNDVMARLQPKSPIP 430
Query: 222 L*EAETDTAVVP 187
++ + T P
Sbjct: 431 ATKSYSATIQTP 442
>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
Fep1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 564
Score = 26.6 bits (56), Expect = 3.6
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -2
Query: 444 GNCGAATGGVGVMGLPPLMSETISSASRLKSPSGRNGLS-HPLSV 313
G C G G P L + I S + KS SGR LS +P SV
Sbjct: 74 GFCNGTGGSASCTGCPAL-NNRIRSLNASKSQSGRKSLSPNPSSV 117
>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
Swd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 357
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +1
Query: 385 AHQGRQAHHSNSTGRGSTVAD 447
AH GR HHSNS ST D
Sbjct: 71 AHLGRFTHHSNSLIHASTKED 91
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 460 LVFVSRQLWSRDRWSWSDGLAALD 389
LV +Q+WS WSW D L+ D
Sbjct: 2066 LVHGIQQIWSAILWSWGDLLSKKD 2089
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 25.8 bits (54), Expect = 6.2
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = -1
Query: 397 ALDERDYLVRFTAQVAIRTERIIPSALRTNL--SVVHSVIRHIVADCGQQGGYK 242
ALD R +LVRF + +I T + +PS+ + + ++ +R+ VA G YK
Sbjct: 539 ALDIRTHLVRFLNKFSIPTAQRLPSSDCSKILKCLLDGFVRN-VAHLQNDGSYK 591
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 25.4 bits (53), Expect = 8.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 266 VSDDMADNAVYNRQISTESGWDNP 337
V D+ D+ + N STES W +P
Sbjct: 82 VGDNNNDSYIINVPFSTESAWSSP 105
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 611 KFSALPHRSLSSPNT*P*GRSPSV 682
+FSA+PHR +S+ +T G SP +
Sbjct: 517 QFSAVPHRKVSAQDTNLMGSSPGM 540
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,856,200
Number of Sequences: 5004
Number of extensions: 56242
Number of successful extensions: 171
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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