Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021208
(721 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0416 - 18891945-18892319,18892416-18892550,18892634-18893638 31 0.70
09_04_0435 - 17545879-17546605,17546721-17546782,17547123-175473... 30 1.6
03_05_0730 + 27208293-27208813,27209052-27209173,27210429-272104... 30 1.6
01_06_1382 - 36856606-36857484,36857962-36858066,36858932-36859546 30 1.6
01_01_0966 - 7601829-7601992,7602147-7602348 30 1.6
10_08_1026 + 22400551-22401161,22401437-22401632,22401837-224018... 30 2.1
06_03_1413 + 30004364-30004517,30004603-30005240 30 2.1
05_01_0063 + 446761-447681 30 2.1
10_08_0806 + 20709599-20710597 29 2.8
09_04_0531 + 18371435-18371504,18372729-18373222 29 2.8
04_01_0156 - 1780395-1780686,1780773-1781248,1781263-1781678,178... 29 2.8
02_02_0376 + 9551050-9551525,9551966-9552278 29 2.8
04_03_0688 + 18731432-18732466,18733246-18733362 29 3.7
10_08_0153 - 15240707-15241019,15241269-15241723 29 4.9
07_01_0862 - 7172083-7172931 29 4.9
06_01_0894 + 6853797-6853971,6855078-6855295,6856353-6856385,685... 29 4.9
05_07_0331 - 29324967-29326256,29326919-29327020,29327226-293272... 28 6.5
10_08_0825 + 20831170-20831349,20831380-20831547,20831627-208316... 28 8.6
08_01_0621 - 5426210-5427787 28 8.6
07_03_1180 - 24601631-24602142,24602518-24602581,24602811-246028... 28 8.6
03_05_1048 - 29950860-29951396,29951810-29952676 28 8.6
03_02_0660 + 10244962-10245606 28 8.6
03_01_0260 - 1999462-1999488,1999748-1999930,2000940-2001146,200... 28 8.6
01_05_0519 - 22897277-22897986,22898126-22898225 28 8.6
>12_02_0416 - 18891945-18892319,18892416-18892550,18892634-18893638
Length = 504
Score = 31.5 bits (68), Expect = 0.70
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Frame = +2
Query: 449 DEHKEEKAEANNVNASLPASHKRKWQVRYYRPLRKQ*TEQRMARQW---WRHAPVRWKFS 619
++ +E+A A ++ LP R R P R+ T Q +A++W WR P+R +
Sbjct: 40 EDDGDEEAAAGDLIGDLPDDILRDIIARL--PTREACTTQVLAKRWRHLWRSTPLRLDYR 97
Query: 620 ALPHRSLSSPN 652
+LP R + N
Sbjct: 98 SLPLRRHNKGN 108
>09_04_0435 -
17545879-17546605,17546721-17546782,17547123-17547335,
17547506-17547590,17547904-17548061,17548174-17548294,
17548765-17548927,17548973-17549097,17550800-17550888,
17550970-17551636,17552671-17552717,17553506-17553862
Length = 937
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +2
Query: 398 GKPITPTPPVAAPQLPTDEHKEEKAEANNVNASLPASHK 514
G P+ P VA+P+ DE +EE+ EA V +PA+ +
Sbjct: 68 GAPLWTVPEVASPR--EDEEEEEEEEAAAVELEMPAARQ 104
>03_05_0730 +
27208293-27208813,27209052-27209173,27210429-27210477,
27210689-27210938,27211474-27211619,27211699-27211846,
27212544-27212612,27212641-27212784
Length = 482
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +2
Query: 404 PITPTPPVAAPQLPTDEHKEEKAEANNVNASLPASHKRKWQVRYYRPLRKQ*TEQRMARQ 583
P+TP PP+ +P L + + A+ P H + R YR R T+ R R+
Sbjct: 9 PVTPPPPLPSPTLTLAPASAPRRRLVLLAAAAPHHHHHHRRRRVYRRQRAAPTQTRAPRR 68
>01_06_1382 - 36856606-36857484,36857962-36858066,36858932-36859546
Length = 532
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = -1
Query: 379 YLVRFTAQVAIRTERIIPSALRTNLSVVH-SVIR 281
+L+RF+A A T+RI+P A+ T S+ H S +R
Sbjct: 413 FLLRFSALFAELTDRIVPVAINTKESMFHGSTVR 446
>01_01_0966 - 7601829-7601992,7602147-7602348
Length = 121
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 358 QVAIRTERIIPSALRTNLSVVHSVIRHIVADCGQ 257
++AI+ E P L L++VHS + VA CGQ
Sbjct: 61 ELAIKIEAASPFPLNFQLAIVHSALLPGVASCGQ 94
>10_08_1026 +
22400551-22401161,22401437-22401632,22401837-22401889,
22402369-22402819
Length = 436
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +2
Query: 299 NRQISTESGWDNPFRPDGDLSREADEIVSLIK-GGKPITPTPPVAAPQLPTDEHKEEKAE 475
+R + W P P+ + AD + + GG P P PP P +P ++++EE+ E
Sbjct: 91 SRPVLVTDEWGEPGVPEPQSTSAADPPTNDDEWGGDPAPPPPP---PPVPEEDNEEERRE 147
>06_03_1413 + 30004364-30004517,30004603-30005240
Length = 263
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 311 STESGWDNPFRPDGDLSREADEIVSLIKGG 400
S + GW NP RP D+++ A E + + +GG
Sbjct: 122 SDDGGWCNPPRPHFDMAQPAWERIGVYRGG 151
>05_01_0063 + 446761-447681
Length = 306
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +2
Query: 371 DEIVSLIKGGKPITPTPPVAAPQLPTDEHKEEKAEANNVNASLPASHKRKWQVRYYRPL 547
D +V + G P+ +AA ++P + HK +A +V + A H R V + R +
Sbjct: 3 DHVVVQQRSGDQPAPSCDIAADEIPVNGHKPGRAVTASVYRAKIAGHSRVLTVSWSRDM 61
>10_08_0806 + 20709599-20710597
Length = 332
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 419 PPVAAPQLPTDEHKEEKAEANNVNASLPASHKRKW 523
P VAAP P D+ + A + + S ASH+ W
Sbjct: 3 PHVAAPNRPMDQPESAAASTSEESESASASHRAIW 37
>09_04_0531 + 18371435-18371504,18372729-18373222
Length = 187
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +2
Query: 413 PTPPVAAPQLPTDEHKEEKAEANNVNASLPASHKRKWQ 526
P PP A P +E EE A A+ V P + WQ
Sbjct: 57 PPPPCGAVDFPFEEGDEEAAAADVVGDQAPGVFRFPWQ 94
>04_01_0156 -
1780395-1780686,1780773-1781248,1781263-1781678,
1781904-1782111
Length = 463
Score = 29.5 bits (63), Expect = 2.8
Identities = 22/74 (29%), Positives = 33/74 (44%)
Frame = +2
Query: 254 LLSTVSDDMADNAVYNRQISTESGWDNPFRPDGDLSREADEIVSLIKGGKPITPTPPVAA 433
LL S+ A N VYN ++++ W NP R D D+ + KGGK T A
Sbjct: 94 LLQRQSNGQA-NRVYNGELTS---WANPARGDDDVGTSKKHKRVIAKGGKVRTRRATKDA 149
Query: 434 PQLPTDEHKEEKAE 475
+ D+ + + E
Sbjct: 150 VETGADDDDDGERE 163
>02_02_0376 + 9551050-9551525,9551966-9552278
Length = 262
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 311 STESGWDNPFRPDGDLSREADEIVSLIKGG 400
S GW NP RP D+++ A E + + +GG
Sbjct: 122 SDSGGWCNPPRPHFDMAQPAWEKIGIYRGG 151
>04_03_0688 + 18731432-18732466,18733246-18733362
Length = 383
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 359 SREADEIVSLIKGGKPITPTPPVAAPQLPTDEHKEEKAEA 478
+R+ E V+ ++ +PI P PP AA Q P + + A A
Sbjct: 214 ARKLKEEVAALEEARPIRPPPPSAAAQRPQRQPRRVAAAA 253
>10_08_0153 - 15240707-15241019,15241269-15241723
Length = 255
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 317 ESGWDNPFRPDGDLSREADEIVSLIKGG 400
+ GW NP RP D+S+ A E + + + G
Sbjct: 117 DGGWCNPPRPHFDMSQPAWETIGIYRAG 144
>07_01_0862 - 7172083-7172931
Length = 282
Score = 28.7 bits (61), Expect = 4.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 210 PPPTAEQDSYILYPPCCP 263
PPPTAE+ +L+PP P
Sbjct: 134 PPPTAEEKKLLLFPPPLP 151
>06_01_0894 +
6853797-6853971,6855078-6855295,6856353-6856385,
6856776-6856856,6856857-6857069,6857184-6857381,
6857456-6857593,6858528-6858644,6858970-6859104
Length = 435
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +2
Query: 413 PTPPVAAPQLPTDEHKEEKAEANNVNASLPASHKRKWQVRYYRPLR 550
P PP A +LPT + + SLPA+ R + PLR
Sbjct: 9 PPPPFTAGRLPTTSRRPCFSAGRIFRCSLPAAAARPRNAAFLAPLR 54
>05_07_0331 -
29324967-29326256,29326919-29327020,29327226-29327278,
29327628-29327674,29327762-29327841,29327933-29328016,
29328383-29328433,29328925-29329050,29329231-29329347,
29329710-29329851,29329986-29330053,29330509-29330608,
29330713-29330840,29330929-29330997,29331083-29331205
Length = 859
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/67 (25%), Positives = 29/67 (43%)
Frame = +2
Query: 323 GWDNPFRPDGDLSREADEIVSLIKGGKPITPTPPVAAPQLPTDEHKEEKAEANNVNASLP 502
G P D + D I++ + P P P P L ++H +E +A+ ++S P
Sbjct: 445 GESKPQAHDAGDTTPIDNILTSLDDAPPPPPPPRHELPLLQLNDH-QEADDADASSSSSP 503
Query: 503 ASHKRKW 523
+R W
Sbjct: 504 HQQRRLW 510
>10_08_0825 +
20831170-20831349,20831380-20831547,20831627-20831698,
20831997-20832075,20832182-20832375,20832469-20832558,
20832851-20832940,20833196-20833282,20833477-20833560,
20833690-20833809,20834096-20834103,20834443-20834575,
20835044-20835125,20835330-20835496,20836006-20836493,
20836551-20836638,20836716-20836818,20836932-20837083,
20837191-20837316,20837459-20837529,20837691-20837753,
20838418-20838490,20838972-20839040,20839180-20839257,
20839434-20839484,20839586-20839696
Length = 1008
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
Frame = +2
Query: 353 DLSREADEIVSLIKGGK-----PITPTPPVAAPQLP 445
DLSR ++++S ++ + P TP PP + P++P
Sbjct: 2 DLSRVGEKLLSSVRSARSLGLLPPTPPPPASRPEVP 37
>08_01_0621 - 5426210-5427787
Length = 525
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 413 PTPPVAAPQLPTDEHKEEKAEANNV 487
P+PP+AAP P EEKAE V
Sbjct: 54 PSPPLAAPYWPRGFADEEKAEKEAV 78
>07_03_1180 -
24601631-24602142,24602518-24602581,24602811-24602876,
24602949-24603070,24603170-24603344,24603466-24603701,
24603781-24604129,24605009-24605146,24605242-24605289
Length = 569
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 383 SLIKGGKPITPTPPVAAPQLPTDEHKEEKAEANNVNASLPASHK 514
S++K K TPTPPVA P+ P + K +NV ++ + K
Sbjct: 256 SVVKVTKEGTPTPPVAKPK-PKPKPKPTAKVTDNVEKAVSSPVK 298
>03_05_1048 - 29950860-29951396,29951810-29952676
Length = 467
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -1
Query: 379 YLVRFTAQVAIRTERIIPSALRTNLSVVH 293
+L+RF+A A T+ I+P A+ +S+ H
Sbjct: 338 FLLRFSALFAELTDEIVPVAMENQMSMFH 366
>03_02_0660 + 10244962-10245606
Length = 214
Score = 27.9 bits (59), Expect = 8.6
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = +2
Query: 419 PPVAAPQLPTDEHKEEKAEANNVNASLPASHKRKWQVRYYRPLRKQ*TEQRMARQWWRHA 598
P VA + P K+ +A A+ VNA A+ +R + R R Q ++R R+ +
Sbjct: 35 PHVARSRGPLPA-KDWRAAASAVNARRAAAGRRHNRTRAQCRARVQTLKERYKRELAKPP 93
Query: 599 PVRWK-FSALPHRSLSSP 649
P W+ FS L L+ P
Sbjct: 94 PSGWRHFSRLQEFLLAGP 111
>03_01_0260 -
1999462-1999488,1999748-1999930,2000940-2001146,
2001895-2002359
Length = 293
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 341 RPDGDLSREADEIVSLIKGGKPITPTPPVAAPQLPTDEHKEEKAEANNVN 490
R D+ RE +E + + + TPP +AP P D K +K + V+
Sbjct: 128 RKAADVKRELEEFFAAKQSAS--SSTPPASAPGAPQDAPKTDKGKILKVS 175
>01_05_0519 - 22897277-22897986,22898126-22898225
Length = 269
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +2
Query: 335 PFRPDGDLSREADEIVSLIKGGKPITPTPPVAAPQLPT--DEH-KEEKAEANN 484
P + D D S ++ + K +P T P AAP P + H +EEKA A +
Sbjct: 130 PPKTDSDQSERRTQLSAREKKEEPPKATAPAAAPPQPAARERHDEEEKARAEH 182
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,070,172
Number of Sequences: 37544
Number of extensions: 441511
Number of successful extensions: 1726
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1720
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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