Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021208
(721 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12332| Best HMM Match : PI-PLC-X (HMM E-Value=0) 31 1.2
SB_20805| Best HMM Match : Lipoxygenase (HMM E-Value=1.5e-13) 30 1.6
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_14927| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_50341| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_49461| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_34904| Best HMM Match : RVT_1 (HMM E-Value=1.1e-06) 28 8.8
>SB_12332| Best HMM Match : PI-PLC-X (HMM E-Value=0)
Length = 1038
Score = 30.7 bits (66), Expect = 1.2
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Frame = -2
Query: 438 CGAATGGVGVMGLPPLMSETISSASRLKSPSGRNGLSHPLS--VLICLLYTALSAISSL- 268
C AT VM LP MS + +PS N L HP+S LI + S + SL
Sbjct: 420 CQVATP-FNVMSLPHPMSSRYPIQYPVATPSNVNSLRHPMSSRYLIQIQSDTPSKVKSLP 478
Query: 267 -TVDSRGGIKCKSPAP 223
++ SR I+C+ P
Sbjct: 479 HSMSSRYPIQCQVATP 494
Score = 29.9 bits (64), Expect = 2.2
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = -2
Query: 438 CGAATGGVGVMGLPPLMSETISSASRLKSPSGRNGLSHPLSVLICL-LYTALSAISSL-- 268
CG AT VM LP MS ++ +PS LSHP+S + A S+ +L
Sbjct: 351 CGLATP-FNVMSLPHPMSCRYPIQCQVATPSNVKSLSHPMSTHCAIQCQAATSSKFNLIP 409
Query: 267 -TVDSRGGIKCKSPAP 223
++ SR I+C+ P
Sbjct: 410 HSMSSRYPIQCQVATP 425
>SB_20805| Best HMM Match : Lipoxygenase (HMM E-Value=1.5e-13)
Length = 338
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +3
Query: 99 VSRIKCSVIFCDCAFLSSERSKVRVSFYQGARPQCLS-PPPTAE 227
V + C + C C F + ++ +S + P CL PPPT +
Sbjct: 247 VHLLTCVIFNCTCQFAAVNSGQLEMSLFMPNAPCCLHLPPPTTK 290
>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 29.1 bits (62), Expect = 3.8
Identities = 21/65 (32%), Positives = 25/65 (38%), Gaps = 8/65 (12%)
Frame = +2
Query: 359 SREADEIVSLIKGGKPITPT------PPVAAPQLPTDEHK--EEKAEANNVNASLPASHK 514
SR V I GG P TP PP + P LP K + A A +N H
Sbjct: 57 SRLKGRTVRRITGGAPSTPAPPPPPPPPSSGPPLPPSNGKCGRKPAGARIINGQNAQPHS 116
Query: 515 RKWQV 529
WQ+
Sbjct: 117 WPWQI 121
>SB_14927| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 85
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 496 SPCVSQTKVASPVLQTTPKAMNGTKNGAAVVEARAG 603
SP S ++ SP++QT +A T N ++E AG
Sbjct: 11 SPLESSSRAPSPLIQTASRARPTTANNDRMLETSAG 46
>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3486
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Frame = +2
Query: 422 PVAAPQLPTDEHKEEKAEANNVNASLPASHKRKWQVRYYRPLRKQ*TEQRMARQW--WRH 595
P+ A TD K AE N +S + ++ KW RY+ + + + A R
Sbjct: 2008 PIGASSSETDIRKALVAELNQRFSSSESLNRSKWDARYWAKFETERKKHQRAASMTNLRR 2067
Query: 596 APVRWK 613
A WK
Sbjct: 2068 AAPDWK 2073
>SB_50341| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 108
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Frame = +2
Query: 422 PVAAPQLPTDEHKEEKAEANNVNASLPASHKRKWQVRYYRPLRKQ*TEQRMARQW--WRH 595
P+ A TD K AE N +S + ++ KW RY+ + + + A R
Sbjct: 19 PIGASSSETDIRKALVAELNQRFSSSESLNRSKWDARYWAKFETERKKHQRAASMTNLRR 78
Query: 596 APVRWK 613
A WK
Sbjct: 79 AAPDWK 84
>SB_49461| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 257
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -2
Query: 399 PPLMSETISSASRLKSPSGRN-GLSHPLSVLICLLYTALSAISSL 268
P + + +S R SPS R LS ++++CL TAL IS++
Sbjct: 119 PIALKKALSYHGRRPSPSTRTPSLSSSTAMVLCLTNTALLTISTI 163
>SB_34904| Best HMM Match : RVT_1 (HMM E-Value=1.1e-06)
Length = 530
Score = 27.9 bits (59), Expect = 8.8
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = -2
Query: 414 GVMGLPPLMSETISSASRLK-SPSGRNGLSHPLSVLICLLYTALSAISSLTVDSRGGIKC 238
G+ LP L +A RL+ S N S P S+++ L+ I S +RG +KC
Sbjct: 79 GIARLPQLNFIGKKTAGRLRLERSALNHSSDPSSIILHCPPKLLNFIKSFHDGTRGTVKC 138
Query: 237 KS 232
+S
Sbjct: 139 ES 140
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,647,841
Number of Sequences: 59808
Number of extensions: 477970
Number of successful extensions: 1438
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1436
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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