Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021208
         (721 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82071-1|CAB04917.1|  209|Caenorhabditis elegans Hypothetical pr...    33   0.27 
U41274-7|AAA82463.1| 1610|Caenorhabditis elegans Hypothetical pr...    32   0.36 
U00067-11|AAK20076.2|  207|Caenorhabditis elegans Regulator of c...    31   0.63 
AF176115-1|AAF01683.1|  207|Caenorhabditis elegans Down Syndrome...    31   0.63 
Z69302-10|CAA93267.1|  295|Caenorhabditis elegans Hypothetical p...    29   2.5  
Z47074-3|CAA87376.1|  295|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AF008590-1|AAB63299.1|  295|Caenorhabditis elegans paraquat resp...    29   2.5  
Z82083-3|CAB04971.1|  756|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U56860-5|AAP40524.1|  685|Caenorhabditis elegans Intermediate fi...    29   3.3  
U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate fi...    29   3.3  
U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate fi...    29   3.3  
AC024200-16|AAF36003.1|  511|Caenorhabditis elegans Hypothetical...    28   7.7  

>Z82071-1|CAB04917.1|  209|Caenorhabditis elegans Hypothetical
           protein W05B5.1 protein.
          Length = 209

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +2

Query: 329 DNPFRPDGDLSREADEIVSLIKGGKPITPTPPVAAPQLPT-DEHKEEKAEANNVNASLP 502
           +NPFRP+  L  E D IV      KP  P+ P +A   PT  +H  + A     N   P
Sbjct: 89  ENPFRPEEILYHEVDPIVEQYL-HKPFPPSRPGSAQNTPTKQQHFTQAATPPPTNHESP 146


>U41274-7|AAA82463.1| 1610|Caenorhabditis elegans Hypothetical
           protein T04G9.1 protein.
          Length = 1610

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 22/78 (28%), Positives = 35/78 (44%)
 Frame = +2

Query: 296 YNRQISTESGWDNPFRPDGDLSREADEIVSLIKGGKPITPTPPVAAPQLPTDEHKEEKAE 475
           YNR+ +  +G   P RP  D +R A  +        PI   PP     +P   H+++++ 
Sbjct: 68  YNRRFTQPNGAPYPLRPHSD-TRNAHRVY-------PIPVEPPQRVHSIPPVYHRQKRSY 119

Query: 476 ANNVNASLPASHKRKWQV 529
           A++V    P     K QV
Sbjct: 120 ASSVQQQKPPPVPIKQQV 137


>U00067-11|AAK20076.2|  207|Caenorhabditis elegans Regulator of
           calcineurin protein 1 protein.
          Length = 207

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 180 YQGARPQCLSPPPTAEQDSYILYPPCCP 263
           Y  A  Q LSPPP  +Q  +++ PPC P
Sbjct: 109 YMSANSQMLSPPPLEKQ--FLISPPCSP 134


>AF176115-1|AAF01683.1|  207|Caenorhabditis elegans Down Syndrome
           candidate region1-like protein protein.
          Length = 207

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 180 YQGARPQCLSPPPTAEQDSYILYPPCCP 263
           Y  A  Q LSPPP  +Q  +++ PPC P
Sbjct: 109 YMSANSQMLSPPPLEKQ--FLISPPCSP 134


>Z69302-10|CAA93267.1|  295|Caenorhabditis elegans Hypothetical
           protein F40F8.7 protein.
          Length = 295

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 395 GGKPITPTPPVAAPQLPTDEHKEEKAEANNVNASLPASHKRKWQV 529
           G  P T +PP   P+LPT +       A+ VN   P  +  + Q+
Sbjct: 9   GSPPATSSPPTTMPKLPTIQDMLNNIGASTVNLMQPNPYLMQNQI 53


>Z47074-3|CAA87376.1|  295|Caenorhabditis elegans Hypothetical
           protein F40F8.7 protein.
          Length = 295

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 395 GGKPITPTPPVAAPQLPTDEHKEEKAEANNVNASLPASHKRKWQV 529
           G  P T +PP   P+LPT +       A+ VN   P  +  + Q+
Sbjct: 9   GSPPATSSPPTTMPKLPTIQDMLNNIGASTVNLMQPNPYLMQNQI 53


>AF008590-1|AAB63299.1|  295|Caenorhabditis elegans paraquat
           responsive protein protein.
          Length = 295

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 395 GGKPITPTPPVAAPQLPTDEHKEEKAEANNVNASLPASHKRKWQV 529
           G  P T +PP   P+LPT +       A+ VN   P  +  + Q+
Sbjct: 9   GSPPATSSPPTTMPKLPTIQDMLNNIGASTVNLMQPNPYLMQNQI 53


>Z82083-3|CAB04971.1|  756|Caenorhabditis elegans Hypothetical
           protein ZK1010.5 protein.
          Length = 756

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/69 (26%), Positives = 25/69 (36%)
 Frame = +2

Query: 272 DDMADNAVYNRQISTESGWDNPFRPDGDLSREADEIVSLIKGGKPITPTPPVAAPQLPTD 451
           DD   ++  N+  +T    D P   DG   + A    S       +   PPV  P L T 
Sbjct: 236 DDNGTSSFTNKTSTTTPAADEPLNLDGGDPKPATMKESNTTADPVVLTNPPVVVPVLATS 295

Query: 452 EHKEEKAEA 478
           E   +   A
Sbjct: 296 EEPNDTTAA 304


>U56860-5|AAP40524.1|  685|Caenorhabditis elegans Intermediate
           filament, c protein2, isoform c protein.
          Length = 685

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +2

Query: 401 KPITPTPPVAAPQLPTDEHKEEKAEANNVNASLPASHKRKWQVRYYR 541
           KP+TPTP    PQ    + +E K E N +       H  K+  R YR
Sbjct: 538 KPLTPTPTPIPPQQQEVKQEELKVE-NKIENDQNEVHLHKFLDRDYR 583


>U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate
           filament, c protein2, isoform a protein.
          Length = 1128

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +2

Query: 401 KPITPTPPVAAPQLPTDEHKEEKAEANNVNASLPASHKRKWQVRYYR 541
           KP+TPTP    PQ    + +E K E N +       H  K+  R YR
Sbjct: 538 KPLTPTPTPIPPQQQEVKQEELKVE-NKIENDQNEVHLHKFLDRDYR 583


>U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate
           filament, c protein2, isoform b protein.
          Length = 1248

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +2

Query: 401 KPITPTPPVAAPQLPTDEHKEEKAEANNVNASLPASHKRKWQVRYYR 541
           KP+TPTP    PQ    + +E K E N +       H  K+  R YR
Sbjct: 538 KPLTPTPTPIPPQQQEVKQEELKVE-NKIENDQNEVHLHKFLDRDYR 583


>AC024200-16|AAF36003.1|  511|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.2 protein.
          Length = 511

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 332 NPFRPDGDLSREADEIVSLIKGGK 403
           NP R + D+ R+ DEI S++K  K
Sbjct: 351 NPTRLNADMRRQLDEIYSMLKASK 374


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,331,986
Number of Sequences: 27780
Number of extensions: 338893
Number of successful extensions: 1137
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1136
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)