Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021208
         (721 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    27   0.24 
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    25   0.95 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    25   0.95 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   1.7  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   8.9  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.9  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 26.6 bits (56), Expect = 0.24
 Identities = 18/71 (25%), Positives = 34/71 (47%)
 Frame = -1

Query: 490 VNIIRFSLFLLVFVSRQLWSRDRWSWSDGLAALDERDYLVRFTAQVAIRTERIIPSALRT 311
           V+ + F +  L F     W +  W W  G+  L  R Y+   ++ V++ T  I+  ++  
Sbjct: 77  VSDLLFLILGLPFELSVFWQQYPWQWGLGICKL--RAYVSETSSYVSVLT--IVAFSIER 132

Query: 310 NLSVVHSVIRH 278
            L++ H  +RH
Sbjct: 133 YLAIYHP-LRH 142


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 24.6 bits (51), Expect = 0.95
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +3

Query: 174 SFYQGARPQCLSPPPTAEQDSYILYPPCCPQSATIWRITLC 296
           SF  G     LS  P+ +  +   YPP  P S +    ++C
Sbjct: 73  SFTAGCHSNLLSTSPSGQNKAVAPYPPNHPLSGSKHLCSIC 113


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 24.6 bits (51), Expect = 0.95
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +3

Query: 174 SFYQGARPQCLSPPPTAEQDSYILYPPCCPQSATIWRITLC 296
           SF  G     LS  P+ +  +   YPP  P S +    ++C
Sbjct: 73  SFTAGCHSNLLSTSPSGQNKAVAPYPPNHPLSGSKHLCSIC 113


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 13/62 (20%), Positives = 26/62 (41%)
 Frame = +2

Query: 410 TPTPPVAAPQLPTDEHKEEKAEANNVNASLPASHKRKWQVRYYRPLRKQ*TEQRMARQWW 589
           +P    A PQLPT+E  +      +     P  +K    +R+     K+  +    ++ W
Sbjct: 447 SPATTAAPPQLPTEESVDALCNTLHHWHHCPEIYKAIEGIRFIADHTKREEDSTRVKEDW 506

Query: 590 RH 595
           ++
Sbjct: 507 KY 508


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -2

Query: 423 GGVGVMGLPP 394
           GG+GV+ LPP
Sbjct: 96  GGIGVLRLPP 105


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 269 SDDMADNAVYNRQISTESGWDNP 337
           +D   D  V+N Q+ + +G+ NP
Sbjct: 177 TDGKHDYRVWNHQLISYAGYKNP 199


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,644
Number of Sequences: 438
Number of extensions: 4210
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)