Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021208
(721 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g49580.1 68414.m05559 calcium-dependent protein kinase, putat... 29 4.1
At3g50230.1 68416.m05493 leucine-rich repeat transmembrane prote... 28 5.4
At3g11760.1 68416.m01443 expressed protein 28 5.4
At4g33400.1 68417.m04747 dem protein-related / defective embryo ... 28 7.2
At2g45250.1 68415.m05633 expressed protein 28 7.2
At2g17920.1 68415.m02075 expressed protein similar to zinc finge... 28 7.2
At1g79410.1 68414.m09254 transporter-related low similarity to o... 28 7.2
At2g44790.1 68415.m05574 uclacyanin II strong similarity to ucla... 27 9.5
At2g38110.1 68415.m04678 phospholipid/glycerol acyltransferase f... 27 9.5
At1g16370.1 68414.m01958 transporter-related low similarity to o... 27 9.5
At1g05280.1 68414.m00534 fringe-related protein Similar to hypot... 27 9.5
>At1g49580.1 68414.m05559 calcium-dependent protein kinase, putative
/ CDPK, putative similar to calcium/calmodulin-dependent
protein kinase CaMK3 [Nicotiana tabacum]
gi|16904226|gb|AAL30820; contains protein kinase domain,
Pfam:PF00069; contains serine/threonine protein kinase
domain, INTERPRO:IPR002290
Length = 606
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +2
Query: 311 STESGWDNPFRPDGDLSREADEIVSLIKGGKPI-TPTPPVAAPQLP 445
ST SG NPF P D + D+ G PI TP+ A+P P
Sbjct: 9 STSSGRPNPFAPGNDYP-QIDDFAPDHPGKSPIPTPSAAKASPFFP 53
>At3g50230.1 68416.m05493 leucine-rich repeat transmembrane protein
kinase, putative receptor-like protein kinase (RKL1),
Arabidopsis thaliana, EMBL:AF084034
Length = 660
Score = 28.3 bits (60), Expect = 5.4
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +3
Query: 174 SFYQGARPQCLSPPPTAEQDSYILYPPCCPQSATIWRITLCTTDRLVRR-ADGI 332
SF LS TA+ D+ +LY P WR C+ DR+VR DG+
Sbjct: 31 SFLPSDAVALLSFKSTADLDNKLLYSLTEPYDYCQWRGVDCSQDRVVRLILDGV 84
>At3g11760.1 68416.m01443 expressed protein
Length = 702
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 407 ITPTP-PVAAPQLPTDEHKEEKAEANNVNASL 499
+ P P P +PQ PT+ H EK + + + A L
Sbjct: 188 VVPLPLPSPSPQQPTETHSVEKEDVSAIKAGL 219
>At4g33400.1 68417.m04747 dem protein-related / defective embryo and
meristems protein-related identical to dem GI:2190419
from [Lycopersicon esculentum]
Length = 645
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 323 GWDNPFRPDGDLSREADEIVSLIKGGKPITP 415
GW NP D + +AD+I+ GG TP
Sbjct: 220 GWANPEAADDSMWEDADDILLQSPGGGSATP 250
>At2g45250.1 68415.m05633 expressed protein
Length = 204
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +2
Query: 413 PTPPVAAPQLPTDEHKEEKAEANNVNASLPASHKRKWQVRY 535
P P A PQ+P+ + + E P SHK W+ RY
Sbjct: 96 PPPTKAPPQIPSSPAQAQAQEPT------PTSHKLDWEERY 130
>At2g17920.1 68415.m02075 expressed protein similar to zinc finger
protein [Arabidopsis thaliana] GI:976277
Length = 307
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +2
Query: 404 PITPTPPVAAPQLPTDEHKEEKAEANNVNASLPASHKRKWQVRYYR 541
P+TP P V AP L E + N S PA H + Y++
Sbjct: 257 PLTPPPRVPAPPLNHQELAAATPYFPSKNCSFPALHSSYYSKWYWQ 302
>At1g79410.1 68414.m09254 transporter-related low similarity to
organic anion transporter 3 [Rattus norvegicus]
GI:5545293; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 515
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = -3
Query: 482 YSLQPFPPCVRQSATVEPRPVELE*WACRP**ARLSR 372
Y ++ FP CVR SAT+ R + AC P A L R
Sbjct: 427 YLVELFPTCVRNSATMMLRQALVVGGACCPLIASLGR 463
>At2g44790.1 68415.m05574 uclacyanin II strong similarity to
uclacyanin II GI:3399769 from [Arabidopsis thaliana];
contains Pfam profile PF02298: Plastocyanin-like domain;
identical to cDNA uclacyanin II GI:3399768
Length = 202
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Frame = +2
Query: 380 VSLIKG--GKPITPTPPVAAPQLPT 448
V+++ G G P TPTPP + P PT
Sbjct: 122 VNVVAGSAGPPATPTPPSSTPGTPT 146
>At2g38110.1 68415.m04678 phospholipid/glycerol acyltransferase
family protein low similarity to SP|O87707 CicA protein
{Caulobacter crescentus}; contains Pfam profile PF01553:
Acyltransferase
Length = 501
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -1
Query: 379 YLVRFTAQVAIRTERIIPSALRTNLSV 299
+L+RF+A A T+RI+P A+ T S+
Sbjct: 385 FLLRFSALFAELTDRIVPVAINTKQSM 411
>At1g16370.1 68414.m01958 transporter-related low similarity to
organic cation transporter OCTN1 from [Homo sapiens]
GI:2605501, [Mus musculus] GI:4126605, [Rattus
norvegicus] GI:5679326; contains Pfam profile PF00083:
major facilitator superfamily protein
Length = 521
Score = 27.5 bits (58), Expect = 9.5
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -3
Query: 527 LATFVCETQG-DWR*HYSLQPFPPCVRQSATVEPRPVELE*WACRP**ARLSR 372
L TF C G + + ++ FP CVR SAT+ R + AC P A + R
Sbjct: 417 LGTFFCARIGFNLMAVFMVEMFPTCVRSSATMMFRQALVVGGACCPLIASIGR 469
>At1g05280.1 68414.m00534 fringe-related protein Similar to
hypothetical protein PID|e327464 (gb|Z97338) various
hypothetical proteins from Arabidopsis thaliana strong
similarity to unknown protein (pir||T13026) similarity
to predicted proteins + similar to hypothetical protein
GB:AAC23643 [Arabidopsis thaliana] + weak similarity to
Fringe [Schistocerca gregaria](GI:6573138);Fringe
encodes an extracellular protein that regulates Notch
signalling.
Length = 461
Score = 27.5 bits (58), Expect = 9.5
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +3
Query: 210 PPPTAEQ--DSYILYPPCCPQSATIWRITLCTTDR-LVRRADGIIRSVRM 350
P P+++ DSY+L P C Q + +R T DR +R A ++ +VR+
Sbjct: 109 PLPSSQNHTDSYLLPPVCVSQDTSRFRYTWRGGDRNAIRIARCVLETVRL 158
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,402,425
Number of Sequences: 28952
Number of extensions: 316838
Number of successful extensions: 1118
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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