Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021207
(537 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 177 1e-45
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 120 1e-28
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 120 1e-28
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 96 3e-21
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 27 1.8
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 27 2.3
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 26 3.1
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 26 3.1
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 26 4.1
SPCC11E10.07c |||translation initiation factor eIF2B alpha subun... 26 4.1
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 5.4
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi... 25 5.4
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 25 5.4
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 25 7.2
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 25 9.5
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 177 bits (430), Expect = 1e-45
Identities = 78/94 (82%), Positives = 87/94 (92%)
Frame = +1
Query: 256 GKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSV 435
GKYVPRA+LVDLEPGTMD+V+SG FG +FRPDN ++GQSGAGN WAKGHYTEGAEL D+V
Sbjct: 57 GKYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAV 116
Query: 436 LDVVRKEAESCDCLQGFQLTHSLGVGTGSGMGTL 537
LDVVR+EAE+CD LQGFQLTHSLG GTGSGMGTL
Sbjct: 117 LDVVRREAEACDALQGFQLTHSLGGGTGSGMGTL 150
Score = 93.1 bits (221), Expect = 2e-20
Identities = 38/53 (71%), Positives = 44/53 (83%)
Frame = +2
Query: 89 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNE 247
MREIVHIQAGQCGNQ+GA FW I+DEHG+D G YHG S+ Q ER+NVY+NE
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNE 53
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 120 bits (290), Expect = 1e-28
Identities = 51/95 (53%), Positives = 71/95 (74%)
Frame = +1
Query: 253 RGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDS 432
+GK+VPR+I VDLEP +D VR+GP+ +F P+ V G+ A NN+A+GHYT G E++DS
Sbjct: 62 QGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDS 121
Query: 433 VLDVVRKEAESCDCLQGFQLTHSLGVGTGSGMGTL 537
VL+ +R+ A++C LQGF + HS G GTGSG+G L
Sbjct: 122 VLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGAL 156
Score = 42.7 bits (96), Expect = 3e-05
Identities = 21/53 (39%), Positives = 30/53 (56%)
Frame = +2
Query: 89 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNE 247
MRE++ + GQ G QIG WE+ EHGI P G +S ++ + N Y N+
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENS--EVHKNNSYLND 51
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 120 bits (289), Expect = 1e-28
Identities = 52/95 (54%), Positives = 68/95 (71%)
Frame = +1
Query: 253 RGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDS 432
+GKYVPR+I VDLEP +D VR+GP+ +F P+ + G+ A NN+A+GHYT G ELVD
Sbjct: 58 QGKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDE 117
Query: 433 VLDVVRKEAESCDCLQGFQLTHSLGVGTGSGMGTL 537
V D +R+ A++C LQGF + HS G GTGSG G L
Sbjct: 118 VTDKIRRIADNCSGLQGFLVFHSFGGGTGSGFGAL 152
Score = 44.4 bits (100), Expect = 1e-05
Identities = 19/34 (55%), Positives = 21/34 (61%)
Frame = +2
Query: 89 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTG 190
MREI+ I GQ G QIG WE+ EHGI P G
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNG 34
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 95.9 bits (228), Expect = 3e-21
Identities = 39/94 (41%), Positives = 66/94 (70%), Gaps = 2/94 (2%)
Frame = +1
Query: 259 KYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSG--AGNNWAKGHYTEGAELVDS 432
+Y+PRAIL+DLEP ++++ S +G ++ P+N + ++G AGNNWA G Y+ + +
Sbjct: 59 RYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFED 117
Query: 433 VLDVVRKEAESCDCLQGFQLTHSLGVGTGSGMGT 534
++D++ +EA+ D L+GF L HS+ GTGSG+G+
Sbjct: 118 IMDMIDREADGSDSLEGFSLLHSIAGGTGSGLGS 151
Score = 56.0 bits (129), Expect = 3e-09
Identities = 23/50 (46%), Positives = 35/50 (70%)
Frame = +2
Query: 92 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYY 241
REI+ +QAGQCGNQIG++FW+ + EHGI P G + ++R +V++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFF 52
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 27.1 bits (57), Expect = 1.8
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +2
Query: 128 NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERI 229
N++G E+++++ +DPT A + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 2.3
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 322 GPFGQIFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 423
GP+G +F P F+F +G NW+ Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 391 AKGHYTEGAELVDSVLDVVRKEAESCDCLQ 480
A+GH G ELV + D +RK++E+ L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 26.2 bits (55), Expect = 3.1
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -2
Query: 464 DSASFRTTSKTESTSSAPSV*CPLAQLLPAPDCPKTKLSGRKICPK 327
++A+ RTTS T+ +PS L P P + S R+ CPK
Sbjct: 390 NAAADRTTSPTQGQPESPS---KSILLRPPPSIASSPESKRRKCPK 432
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +1
Query: 343 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDC 474
RP +F G++ G + E D ++ + + ESCDC
Sbjct: 955 RPSRLIF-YDNCGDSSGAGLCNKAYEHTDELITMAIERIESCDC 997
>SPCC11E10.07c |||translation initiation factor eIF2B alpha
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 341
Score = 25.8 bits (54), Expect = 4.1
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -2
Query: 530 PIPEPVPTPSECV 492
P PEP+PTPS+ +
Sbjct: 279 PEPEPIPTPSDAI 291
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 25.4 bits (53), Expect = 5.4
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = -2
Query: 347 GRKICPKGPERTESMVPGSKSTRMARGTYLPR 252
G I PER + KS RMAR LPR
Sbjct: 106 GNNINYPTPERLQKSSASRKSGRMARSQELPR 137
>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
Gap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 766
Score = 25.4 bits (53), Expect = 5.4
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = -3
Query: 241 VVYIDALQLQVRVPMVSTGGVDAVLVGDDLPELSSDLVAALTSLDM 104
++Y+DA L +++ + G A V DLP L +D V++L S+ +
Sbjct: 511 ILYVDAKTLFIQLLRLLPSGHPATRVPLDLP-LIADSVSSLKSMSL 555
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 380 PAPDCPKTKLSGRKICPKGPERTESMVPGSKS 285
P+ PK L R I P GPE + + GS S
Sbjct: 20 PSTPPPKEVLHTRVIVPNGPEEIKLRLVGSHS 51
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 25.0 bits (52), Expect = 7.2
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = -1
Query: 429 IDELSTLRVVSLGPVVTGAGLSEDEVVRTEDLSERSRAD 313
+D +LR VSL T AGLS DEV + S+ S A+
Sbjct: 369 LDFCDSLRRVSLHVDPTLAGLSPDEVENFYNKSKNSLAN 407
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 24.6 bits (51), Expect = 9.5
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 372 GLSEDEVVRTEDLSERSRADRVHGAGLQVDEDG 274
G+S E+ R +D S+ R +RVH DEDG
Sbjct: 240 GISGFEINRQKDTSDMKRNNRVH----MDDEDG 268
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,202,823
Number of Sequences: 5004
Number of extensions: 42283
Number of successful extensions: 144
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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