Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021207
         (537 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    25   0.65 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   0.86 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.5  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   3.5  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    22   4.6  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    22   4.6  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    22   4.6  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    22   4.6  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    21   6.0  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    21   6.0  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    21   6.0  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    21   6.0  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   6.0  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   6.0  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   6.0  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   6.0  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   6.0  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   6.0  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   6.0  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   6.0  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   6.0  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    21   8.0  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    21   8.0  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    21   8.0  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    21   8.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.0  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 24.6 bits (51), Expect = 0.65
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +1

Query: 424 VDSVLDVVRKEAESCDCLQG 483
           +DS+++++R   ++CD L G
Sbjct: 106 IDSIINIIRVRVDACDRLWG 125


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.2 bits (50), Expect = 0.86
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 154 LPELSSDLVAALTSLDMYDFPHFVLFM 74
           L E + +L  AL+S++   F HFVL M
Sbjct: 870 LVEFALELKKALSSINEQSFNHFVLKM 896


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -1

Query: 384  VTGAGLSEDEVVRTEDLSERSRADR-VHGAGLQVDED 277
            ++ AG  +++  R     +RS  +R VH  G Q D D
Sbjct: 1403 ISRAGSRDEDSTRDSTKLDRSSREREVHNGGQQEDRD 1439


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 527 IPEPVPTPSECVSWNP 480
           IP PVP P  C ++ P
Sbjct: 342 IPVPVPVPIHCGNFPP 357


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 536 RVPIPEPVPTP 504
           ++P+P PVP P
Sbjct: 110 QIPVPVPVPVP 120


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 536 RVPIPEPVPTP 504
           ++P+P PVP P
Sbjct: 110 QIPVPVPVPVP 120


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 536 RVPIPEPVPTP 504
           ++P+P PVP P
Sbjct: 110 QIPVPVPVPVP 120


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 536 RVPIPEPVPTP 504
           ++P+P PVP P
Sbjct: 343 QIPVPVPVPVP 353


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = -2

Query: 536 RVPIPEPVPTP 504
           ++P+P P+P P
Sbjct: 110 QIPVPVPIPVP 120


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 527 IPEPVPTPSECVSWNP 480
           IP PVP P  C ++ P
Sbjct: 116 IPVPVPVPIYCGNFPP 131


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 527 IPEPVPTPSECVSWNP 480
           IP PVP P  C ++ P
Sbjct: 116 IPVPVPVPIYCGNFPP 131


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 527 IPEPVPTPSECVSWNP 480
           IP PVP P  C ++ P
Sbjct: 118 IPVPVPVPVYCGNFPP 133


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 527 IPEPVPTPSECVSWNP 480
           IP PVP P  C ++ P
Sbjct: 122 IPVPVPVPVYCGNFPP 137


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 527 IPEPVPTPSECVSWNP 480
           IP PVP P  C ++ P
Sbjct: 122 IPVPVPVPVYCGNFPP 137


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 527 IPEPVPTPSECVSWNP 480
           IP PVP P  C ++ P
Sbjct: 127 IPVPVPVPIYCGNFPP 142


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 527 IPEPVPTPSECVSWNP 480
           IP PVP P  C ++ P
Sbjct: 333 IPVPVPVPIYCGNFPP 348


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 527 IPEPVPTPSECVSWNP 480
           IP PVP P  C ++ P
Sbjct: 344 IPVPVPVPIYCGNFPP 359


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 527 IPEPVPTPSECVSWNP 480
           IP PVP P  C ++ P
Sbjct: 362 IPVPVPVPIYCGNFPP 377


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 527 IPEPVPTPSECVSWNP 480
           IP PVP P  C ++ P
Sbjct: 354 IPVPVPVPIYCGNFPP 369


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 527 IPEPVPTPSECVSWNP 480
           IP PVP P  C ++ P
Sbjct: 361 IPVPVPVPIYCGNFPP 376


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 527 IPEPVPTPSECVSWNP 480
           IP PVP P  C ++ P
Sbjct: 364 IPVPVPVPIYCGNFPP 379


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 527 IPEPVPTPSECVSWNP 480
           IP PVP P  C ++ P
Sbjct: 332 IPVPVPIPIYCGNFPP 347


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 527 IPEPVPTPSECVSWNP 480
           IP PVP P  C ++ P
Sbjct: 343 IPVPVPIPIYCGNFPP 358


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 527 IPEPVPTPSECVSWNP 480
           IP PVP P  C ++ P
Sbjct: 343 IPVPVPIPIYCGNFPP 358


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 527 IPEPVPTPSECVSWNP 480
           IP PVP P  C ++ P
Sbjct: 332 IPVPVPIPIYCGNFPP 347


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 480 GIPTDTLARRRHRFRYGHP 536
           GIP+ TL +R HR     P
Sbjct: 438 GIPSTTLWQRAHRLGIDTP 456


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,684
Number of Sequences: 438
Number of extensions: 3403
Number of successful extensions: 30
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)