Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021207
(537 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 194 3e-50
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 193 7e-50
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 192 1e-49
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 191 2e-49
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 191 2e-49
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 191 3e-49
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 190 5e-49
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 188 2e-48
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 188 2e-48
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 113 7e-26
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 113 7e-26
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 112 1e-25
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 112 1e-25
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 112 1e-25
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 112 1e-25
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 109 2e-24
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 90 1e-18
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 89 1e-18
At2g31580.1 68415.m03858 expressed protein contains Pfam profi... 32 0.28
At4g37190.1 68417.m05265 expressed protein 31 0.64
At5g24010.1 68418.m02821 protein kinase family protein contains ... 29 2.0
At2g37740.1 68415.m04629 zinc finger (C2H2 type) family protein ... 29 2.6
At1g43640.1 68414.m05010 F-box family protein / tubby family pro... 28 3.4
At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5 ... 28 4.5
At3g19570.2 68416.m02482 expressed protein contains Pfam domain,... 28 4.5
At3g19570.1 68416.m02481 expressed protein contains Pfam domain,... 28 4.5
At3g10070.1 68416.m01207 transcription initiation factor IID (TF... 28 4.5
At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putati... 27 6.0
At1g25280.2 68414.m03138 F-box family protein / tubby family pro... 27 6.0
At1g25280.1 68414.m03137 F-box family protein / tubby family pro... 27 6.0
At5g65390.1 68418.m08224 arabinogalactan-protein (AGP7) 27 7.9
At3g54180.1 68416.m05989 cell division control protein 2 homolog... 27 7.9
At3g50660.1 68416.m05541 steroid 22-alpha-hydroxylase (CYP90B1) ... 27 7.9
At3g01650.1 68416.m00096 copine-related low similarity to SP|Q99... 27 7.9
At2g38800.1 68415.m04764 calmodulin-binding protein-related cont... 27 7.9
At2g32810.1 68415.m04016 beta-galactosidase, putative / lactase,... 27 7.9
At1g53300.1 68414.m06041 thioredoxin family protein contains Pfa... 27 7.9
At1g33360.1 68414.m04129 ATP-dependent Clp protease ATP-binding ... 27 7.9
At1g09530.2 68414.m01069 phytochrome interacting factor 3 (PIF3)... 27 7.9
At1g09530.1 68414.m01068 phytochrome interacting factor 3 (PIF3)... 27 7.9
At4g01050.1 68417.m00142 hydroxyproline-rich glycoprotein family... 23 8.8
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 194 bits (473), Expect = 3e-50
Identities = 86/94 (91%), Positives = 92/94 (97%)
Frame = +1
Query: 256 GKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSV 435
GKYVPRA+L+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSV
Sbjct: 57 GKYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSV 116
Query: 436 LDVVRKEAESCDCLQGFQLTHSLGVGTGSGMGTL 537
LDVVRKEAE+CDCLQGFQ+ HSLG GTGSGMGTL
Sbjct: 117 LDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTL 150
Score = 96.7 bits (230), Expect = 9e-21
Identities = 42/53 (79%), Positives = 46/53 (86%)
Frame = +2
Query: 89 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNE 247
MREI+HIQ GQCGNQIGAKFWE+I EHGID TG GD+DLQLERINVY+NE
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDLQLERINVYFNE 53
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 193 bits (470), Expect = 7e-50
Identities = 85/94 (90%), Positives = 92/94 (97%)
Frame = +1
Query: 256 GKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSV 435
G+YVPRA+L+DLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSV
Sbjct: 57 GRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSV 116
Query: 436 LDVVRKEAESCDCLQGFQLTHSLGVGTGSGMGTL 537
LDVVRKEAE+CDCLQGFQ+ HSLG GTGSGMGTL
Sbjct: 117 LDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTL 150
Score = 99.1 bits (236), Expect = 2e-21
Identities = 41/53 (77%), Positives = 48/53 (90%)
Frame = +2
Query: 89 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNE 247
MREI+HIQ GQCGNQIG+KFWE+++ EHGID TG Y GDS+LQLER+NVYYNE
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSELQLERVNVYYNE 53
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 192 bits (469), Expect = 1e-49
Identities = 84/94 (89%), Positives = 92/94 (97%)
Frame = +1
Query: 256 GKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSV 435
G+YVPRA+L+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+V
Sbjct: 58 GRYVPRAVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAV 117
Query: 436 LDVVRKEAESCDCLQGFQLTHSLGVGTGSGMGTL 537
LDVVRKEAE+CDCLQGFQ+ HSLG GTGSGMGTL
Sbjct: 118 LDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTL 151
Score = 99 bits (238), Expect = 9e-22
Identities = 44/54 (81%), Positives = 48/54 (88%), Gaps = 1/54 (1%)
Frame = +2
Query: 89 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGD-SDLQLERINVYYNE 247
MREI+HIQ GQCGNQIG+KFWE+I DEHGID TG Y GD +DLQLERINVYYNE
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGDTADLQLERINVYYNE 54
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 191 bits (466), Expect = 2e-49
Identities = 84/94 (89%), Positives = 92/94 (97%)
Frame = +1
Query: 256 GKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSV 435
G++VPRA+L+DLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSV
Sbjct: 57 GRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSV 116
Query: 436 LDVVRKEAESCDCLQGFQLTHSLGVGTGSGMGTL 537
LDVVRKEAE+CDCLQGFQ+ HSLG GTGSGMGTL
Sbjct: 117 LDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTL 150
Score = 100 bits (239), Expect = 7e-22
Identities = 41/53 (77%), Positives = 47/53 (88%)
Frame = +2
Query: 89 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNE 247
MREI+HIQ GQCGNQIGAKFWE++ EHGID TG Y G++DLQLER+NVYYNE
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQLERVNVYYNE 53
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 191 bits (466), Expect = 2e-49
Identities = 83/94 (88%), Positives = 92/94 (97%)
Frame = +1
Query: 256 GKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSV 435
G+YVPRA+L+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+V
Sbjct: 58 GRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAV 117
Query: 436 LDVVRKEAESCDCLQGFQLTHSLGVGTGSGMGTL 537
LDVVRKEAE+CDCLQGFQ+ HSLG GTGSGMGTL
Sbjct: 118 LDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTL 151
Score = 104 bits (249), Expect = 4e-23
Identities = 44/54 (81%), Positives = 50/54 (92%), Gaps = 1/54 (1%)
Frame = +2
Query: 89 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDS-DLQLERINVYYNE 247
MREI+H+Q GQCGNQIG+KFWE+I DEHG+DPTG Y+GDS DLQLERINVYYNE
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSADLQLERINVYYNE 54
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 191 bits (465), Expect = 3e-49
Identities = 84/94 (89%), Positives = 92/94 (97%)
Frame = +1
Query: 256 GKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSV 435
G+YVPRAIL+DLEPGTMDSVR+GP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+V
Sbjct: 57 GRYVPRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAV 116
Query: 436 LDVVRKEAESCDCLQGFQLTHSLGVGTGSGMGTL 537
LDVVRKEAE+CDCLQGFQ+ HSLG GTGSGMGTL
Sbjct: 117 LDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTL 150
Score = 105 bits (251), Expect = 2e-23
Identities = 43/53 (81%), Positives = 49/53 (92%)
Frame = +2
Query: 89 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNE 247
MREI+HIQ GQCGNQIG+KFWE++ DEHGIDPTG Y G+SDLQLER+NVYYNE
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNE 53
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 190 bits (463), Expect = 5e-49
Identities = 85/94 (90%), Positives = 91/94 (96%)
Frame = +1
Query: 256 GKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSV 435
GKYVPRA+L+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSV
Sbjct: 57 GKYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSV 116
Query: 436 LDVVRKEAESCDCLQGFQLTHSLGVGTGSGMGTL 537
LDVVRKEAE+ DCLQGFQ+ HSLG GTGSGMGTL
Sbjct: 117 LDVVRKEAENSDCLQGFQVCHSLGGGTGSGMGTL 150
Score = 99.1 bits (236), Expect = 2e-21
Identities = 43/53 (81%), Positives = 47/53 (88%)
Frame = +2
Query: 89 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNE 247
MREI+HIQ GQCGNQIGAKFWE+I DEHGID TG Y GDS LQLERI+VY+NE
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPLQLERIDVYFNE 53
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 188 bits (458), Expect = 2e-48
Identities = 82/94 (87%), Positives = 91/94 (96%)
Frame = +1
Query: 256 GKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSV 435
G++VPRA+L+DLEPGTMDS+RSGP+GQ FRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSV
Sbjct: 57 GRFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSV 116
Query: 436 LDVVRKEAESCDCLQGFQLTHSLGVGTGSGMGTL 537
LDVVRKEAE+CDCLQGFQ+ HSLG GTGSGMGTL
Sbjct: 117 LDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTL 150
Score = 105 bits (253), Expect = 1e-23
Identities = 45/53 (84%), Positives = 48/53 (90%)
Frame = +2
Query: 89 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNE 247
MREI+HIQ GQCGNQIGAKFWE++ EHGIDPTG Y GDSDLQLERINVYYNE
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNE 53
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 188 bits (458), Expect = 2e-48
Identities = 82/94 (87%), Positives = 91/94 (96%)
Frame = +1
Query: 256 GKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSV 435
G++VPRA+L+DLEPGTMDS+RSGP+GQ FRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSV
Sbjct: 57 GRFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSV 116
Query: 436 LDVVRKEAESCDCLQGFQLTHSLGVGTGSGMGTL 537
LDVVRKEAE+CDCLQGFQ+ HSLG GTGSGMGTL
Sbjct: 117 LDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTL 150
Score = 105 bits (253), Expect = 1e-23
Identities = 45/53 (84%), Positives = 48/53 (90%)
Frame = +2
Query: 89 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNE 247
MREI+HIQ GQCGNQIGAKFWE++ EHGIDPTG Y GDSDLQLERINVYYNE
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNE 53
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 113 bits (272), Expect = 7e-26
Identities = 50/94 (53%), Positives = 70/94 (74%)
Frame = +1
Query: 256 GKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSV 435
GK+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD
Sbjct: 59 GKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLC 118
Query: 436 LDVVRKEAESCDCLQGFQLTHSLGVGTGSGMGTL 537
LD VRK A++C LQGF + +++G GTGSG+G+L
Sbjct: 119 LDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSL 152
Score = 45.6 bits (103), Expect = 2e-05
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +2
Query: 89 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNE 247
MREI+ I GQ G Q+G WE+ EHGI P G D+ + + + N +++E
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSE 55
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 113 bits (272), Expect = 7e-26
Identities = 50/94 (53%), Positives = 70/94 (74%)
Frame = +1
Query: 256 GKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSV 435
GK+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD
Sbjct: 59 GKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLC 118
Query: 436 LDVVRKEAESCDCLQGFQLTHSLGVGTGSGMGTL 537
LD VRK A++C LQGF + +++G GTGSG+G+L
Sbjct: 119 LDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSL 152
Score = 45.6 bits (103), Expect = 2e-05
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +2
Query: 89 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNE 247
MREI+ I GQ G Q+G WE+ EHGI P G D+ + + + N +++E
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSE 55
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 112 bits (270), Expect = 1e-25
Identities = 49/94 (52%), Positives = 70/94 (74%)
Frame = +1
Query: 256 GKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSV 435
GK+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD
Sbjct: 59 GKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLC 118
Query: 436 LDVVRKEAESCDCLQGFQLTHSLGVGTGSGMGTL 537
LD +RK A++C LQGF + +++G GTGSG+G+L
Sbjct: 119 LDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSL 152
Score = 43.2 bits (97), Expect = 1e-04
Identities = 19/39 (48%), Positives = 22/39 (56%)
Frame = +2
Query: 89 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGD 205
MRE + I GQ G Q+G WE+ EHGI P G GD
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGD 39
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 112 bits (270), Expect = 1e-25
Identities = 49/94 (52%), Positives = 70/94 (74%)
Frame = +1
Query: 256 GKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSV 435
GK+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD
Sbjct: 59 GKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLC 118
Query: 436 LDVVRKEAESCDCLQGFQLTHSLGVGTGSGMGTL 537
LD +RK A++C LQGF + +++G GTGSG+G+L
Sbjct: 119 LDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSL 152
Score = 43.2 bits (97), Expect = 1e-04
Identities = 19/39 (48%), Positives = 22/39 (56%)
Frame = +2
Query: 89 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGD 205
MRE + I GQ G Q+G WE+ EHGI P G GD
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGD 39
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 112 bits (270), Expect = 1e-25
Identities = 49/94 (52%), Positives = 70/94 (74%)
Frame = +1
Query: 256 GKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSV 435
GK+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD
Sbjct: 59 GKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLC 118
Query: 436 LDVVRKEAESCDCLQGFQLTHSLGVGTGSGMGTL 537
LD +RK A++C LQGF + +++G GTGSG+G+L
Sbjct: 119 LDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSL 152
Score = 40.7 bits (91), Expect = 6e-04
Identities = 18/39 (46%), Positives = 21/39 (53%)
Frame = +2
Query: 89 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGD 205
MRE + I GQ G Q+G WE+ EHGI P G D
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSD 39
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 112 bits (270), Expect = 1e-25
Identities = 49/94 (52%), Positives = 70/94 (74%)
Frame = +1
Query: 256 GKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSV 435
GK+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD
Sbjct: 59 GKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLC 118
Query: 436 LDVVRKEAESCDCLQGFQLTHSLGVGTGSGMGTL 537
LD +RK A++C LQGF + +++G GTGSG+G+L
Sbjct: 119 LDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSL 152
Score = 40.7 bits (91), Expect = 6e-04
Identities = 18/39 (46%), Positives = 21/39 (53%)
Frame = +2
Query: 89 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGD 205
MRE + I GQ G Q+G WE+ EHGI P G D
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSD 39
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 109 bits (261), Expect = 2e-24
Identities = 46/94 (48%), Positives = 71/94 (75%)
Frame = +1
Query: 256 GKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSV 435
G++VPRA+ +DLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD+
Sbjct: 59 GQHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDTC 118
Query: 436 LDVVRKEAESCDCLQGFQLTHSLGVGTGSGMGTL 537
L+ +RK A++C LQGF + +++G GTGSG+G+L
Sbjct: 119 LERLRKLADNCTGLQGFLVFNAVGGGTGSGLGSL 152
Score = 46.4 bits (105), Expect = 1e-05
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = +2
Query: 89 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNE 247
MREI+ I GQ G Q+G WE+ EHGI P G DS + + N +++E
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSE 55
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 89.8 bits (213), Expect = 1e-18
Identities = 38/93 (40%), Positives = 62/93 (66%), Gaps = 2/93 (2%)
Frame = +1
Query: 262 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSV 435
Y+PRA+L+DLEP ++ +++G + ++ +N GAGNNWA G Y +G + + +
Sbjct: 60 YIPRALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASG-YHQGKGVEEEI 118
Query: 436 LDVVRKEAESCDCLQGFQLTHSLGVGTGSGMGT 534
+D++ +EA+ D L+GF L HS+ GTGSGMG+
Sbjct: 119 MDMIDREADGSDSLEGFVLCHSIAGGTGSGMGS 151
Score = 48.0 bits (109), Expect = 4e-06
Identities = 21/50 (42%), Positives = 31/50 (62%)
Frame = +2
Query: 92 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYY 241
REI+ +Q GQCGNQIG +FW+ + EHGI G + +R +V++
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFF 52
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 89.4 bits (212), Expect = 1e-18
Identities = 38/93 (40%), Positives = 62/93 (66%), Gaps = 2/93 (2%)
Frame = +1
Query: 262 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSV 435
Y+PRA+L+DLEP ++ +++G + ++ +N GAGNNWA G Y +G + + +
Sbjct: 60 YIPRALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASG-YHQGKGVEEEI 118
Query: 436 LDVVRKEAESCDCLQGFQLTHSLGVGTGSGMGT 534
+D++ +EA+ D L+GF L HS+ GTGSGMG+
Sbjct: 119 MDMIDREADGSDSLEGFVLCHSIAGGTGSGMGS 151
Score = 48.0 bits (109), Expect = 4e-06
Identities = 21/50 (42%), Positives = 31/50 (62%)
Frame = +2
Query: 92 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYY 241
REI+ +Q GQCGNQIG +FW+ + EHGI G + +R +V++
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFF 52
>At2g31580.1 68415.m03858 expressed protein contains Pfam profile:
PF04446 family of unknown function (DUF549)
Length = 567
Score = 31.9 bits (69), Expect = 0.28
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = +1
Query: 421 LVDSVLDVVRKEAESCDCLQGFQLTHSLGV 510
+++SV VVRKEAE+C+CLQ F ++ S V
Sbjct: 1 MINSV-GVVRKEAENCNCLQVFFVSGSFKV 29
>At4g37190.1 68417.m05265 expressed protein
Length = 562
Score = 30.7 bits (66), Expect = 0.64
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 89 MREIVHIQAGQCGNQIGAKFWEIISDEHGI 178
MREIV IQ G+ N +G+ FW + G+
Sbjct: 1 MREIVTIQVGEFANFVGSHFWNFQDELLGL 30
>At5g24010.1 68418.m02821 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 824
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -2
Query: 503 SECVSWNPWRQSHDSASFRTTSKTESTSSAPSV*CPLAQL 384
SE W P R+ S++ RTT +T S+S ++ A+L
Sbjct: 443 SESTGWTPLRRFRGSSNSRTTERTVSSSGYHTLRISFAEL 482
>At2g37740.1 68415.m04629 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 304
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -3
Query: 496 VSVGIPGGNHTIPLPFERRLKLNRRAQHPPCSVPWPSC 383
VS G+PG HT P ++ ++ +++ P S PW SC
Sbjct: 136 VSSGLPGKQHTSSSPPSFVVEPSKNSKYIPSSSPW-SC 172
>At1g43640.1 68414.m05010 F-box family protein / tubby family
protein contains Pfam profile: PF01167: Tub family;
contains Pfam PF00646: F-box domain; similar to Chain A,
C-Terminal Domain Of Mouse Brain Tubby Protein
Length(GI:6730158) [Mus musculus]; similar to Tubby
related protein 1 (Tubby-like protein 1)
(Swiss-Prot:O00294) [Homo sapiens]; similar to
phosphodiesterase (GI:467578) [Mus musculus]
Length = 429
Score = 28.3 bits (60), Expect = 3.4
Identities = 17/66 (25%), Positives = 35/66 (53%)
Frame = -2
Query: 392 AQLLPAPDCPKTKLSGRKICPKGPERTESMVPGSKSTRMARGTYLPRRLHCSIH*CAPTA 213
+Q+L P+ ++ + +K+ PK P + ++ + + GT PRR++C +H P+
Sbjct: 212 SQILSPPNRSRS-FNSKKVSPKVPSGSYNIAQVTYELNLL-GTRGPRRMNCIMH-SIPSL 268
Query: 212 SQSPHG 195
+ P G
Sbjct: 269 ALEPGG 274
>At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to pre-mRNA splicing
factor PRP17 (SP:O60508) [Homo sapiens]
Length = 457
Score = 27.9 bits (59), Expect = 4.5
Identities = 18/70 (25%), Positives = 28/70 (40%)
Frame = -2
Query: 533 VPIPEPVPTPSECVSWNPWRQSHDSASFRTTSKTESTSSAPSV*CPLAQLLPAPDCPKTK 354
+P+P PVP P VS ++ T ++ S P + + D P+
Sbjct: 72 IPVPVPVPVPGRYVSKRERSLLASLSTIPTPDQSSDLSQKPYSSPTVLGSISDSDVPRHV 131
Query: 353 LSGRKICPKG 324
LS + PKG
Sbjct: 132 LSSVRHRPKG 141
>At3g19570.2 68416.m02482 expressed protein contains Pfam domain,
PF04484: Family of unknown function (DUF566)
Length = 644
Score = 27.9 bits (59), Expect = 4.5
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Frame = -2
Query: 506 PSECVSWNPWRQSHDSASFRTTSKTESTSSAPSV*CPLAQLLPAPDCPKTKLSGRKI--C 333
PS +S +P SH + + TT+ + STSS+ SV ++ P+P +T S +
Sbjct: 48 PSRYLSPSP---SHSTTTTTTTATSTSTSSSSSVILRSSKRYPSPLLSRTTNSASNLVYT 104
Query: 332 PKG-PERTESM 303
P P+R++S+
Sbjct: 105 PSSLPKRSQSV 115
>At3g19570.1 68416.m02481 expressed protein contains Pfam domain,
PF04484: Family of unknown function (DUF566)
Length = 627
Score = 27.9 bits (59), Expect = 4.5
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Frame = -2
Query: 506 PSECVSWNPWRQSHDSASFRTTSKTESTSSAPSV*CPLAQLLPAPDCPKTKLSGRKI--C 333
PS +S +P SH + + TT+ + STSS+ SV ++ P+P +T S +
Sbjct: 48 PSRYLSPSP---SHSTTTTTTTATSTSTSSSSSVILRSSKRYPSPLLSRTTNSASNLVYT 104
Query: 332 PKG-PERTESM 303
P P+R++S+
Sbjct: 105 PSSLPKRSQSV 115
>At3g10070.1 68416.m01207 transcription initiation factor IID
(TFIID) subunit A family protein similar to hypothetical
protein GB:CAB10099 [Schizosaccharomyces pombe];
contains Pfam profile PF03847: Transcription initiation
factor TFIID subunit A
Length = 539
Score = 27.9 bits (59), Expect = 4.5
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 3/92 (3%)
Frame = -2
Query: 530 PIPEPVPTPSE-CVSWNP--WRQSHDSASFRTTSKTESTSSAPSV*CPLAQLLPAPDCPK 360
PIP P PTPS+ S P + Q + T +E+TS+ S + Q
Sbjct: 147 PIPSPSPTPSQHSPSAFPGSFGQQYGGLGRGTVGMSEATSNTSSPQVRMMQGTQGIGMMG 206
Query: 359 TKLSGRKICPKGPERTESMVPGSKSTRMARGT 264
T SG +I P G + + P S R A T
Sbjct: 207 TLGSGSQIRPSGMTQHQQR-PTQSSLRPASST 237
>At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putative
similar to (1-4)-beta-mannan endohydrolase [Coffea
arabica] GI:10178872, (1-4)-beta-mannan endohydrolase
GB:AAB87859 [Lycopersicon esculentum]; contains Pfam
profile PF00150: Cellulase (glycosyl hydrolase family 5)
Length = 408
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 95 EIVHIQAGQCGNQIGAKFWEIISD 166
+I++ A + G+ GA FWE+IS+
Sbjct: 346 DIIYASAQKGGSAAGALFWEVISE 369
>At1g25280.2 68414.m03138 F-box family protein / tubby family
protein similar to Tubby protein homolog (SP:O88808)
[Rattus norvegicus]; contains Pfam PF00646: F-box domain
and Pfam PF01167: Tub family;
Length = 267
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = -2
Query: 362 KTKLSGRKICPKGPERTESMVPGSKSTRMARGTYLPRRLHCSIH*CAPTASQSPHG 195
+++ R++ PK P + ++ + + GT PRR+HC ++ P +S P G
Sbjct: 49 RSRFHSRRVSPKVPSGSYNIAQITYELNVL-GTRGPRRMHCIMN-SIPISSLEPGG 102
>At1g25280.1 68414.m03137 F-box family protein / tubby family
protein similar to Tubby protein homolog (SP:O88808)
[Rattus norvegicus]; contains Pfam PF00646: F-box domain
and Pfam PF01167: Tub family;
Length = 445
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = -2
Query: 362 KTKLSGRKICPKGPERTESMVPGSKSTRMARGTYLPRRLHCSIH*CAPTASQSPHG 195
+++ R++ PK P + ++ + + GT PRR+HC ++ P +S P G
Sbjct: 227 RSRFHSRRVSPKVPSGSYNIAQITYELNVL-GTRGPRRMHCIMN-SIPISSLEPGG 280
>At5g65390.1 68418.m08224 arabinogalactan-protein (AGP7)
Length = 130
Score = 27.1 bits (57), Expect = 7.9
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = -2
Query: 524 PEPVPTPSECVSWNPWRQSHDSASFRTTSKTESTSSAPSV*CPLAQLLPAPDCP 363
P PV TP + P + S TS S++ +PS P A PAP+ P
Sbjct: 34 PPPVATPPPAATPAPTTTPPPAVSPAPTSSPPSSAPSPSSDAPTAS-PPAPEGP 86
>At3g54180.1 68416.m05989 cell division control protein 2 homolog B
(CDC2B) identical to cell division control protein 2
homolog B [Arabidopsis thaliana] SWISS-PROT:P25859
Length = 309
Score = 27.1 bits (57), Expect = 7.9
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = -3
Query: 292 PSRRGWRGARTCRGGFIVVYIDALQLQVRVPMVSTGGVDAVLVGDDLPELSSDLVAALTS 113
P+ + W G T R + + L + VP +S GVD L+ L ++ ++A T+
Sbjct: 238 PTEQQWPGVSTLRDWHVYPKWEPQDLTLAVPSLSPQGVD--LLTKMLKYNPAERISAKTA 295
Query: 112 LD 107
LD
Sbjct: 296 LD 297
>At3g50660.1 68416.m05541 steroid 22-alpha-hydroxylase (CYP90B1)
(DWF4) identical to gi:2935342
Length = 513
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -1
Query: 363 EDEVVRTEDLSERSRADRVHGAGLQVDEDGAGHVL 259
E+E V+TED +E S++D V + D+D G VL
Sbjct: 259 EEEEVKTEDEAEMSKSDHVRKQ--RTDDDLLGWVL 291
>At3g01650.1 68416.m00096 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 489
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = -2
Query: 530 PIPEPVPTPSECVSWNPWRQSHDSASFRTTSKTESTSSAPS 408
P P PVP PS S+ P AS + + APS
Sbjct: 48 PAPAPVPAPSPASSYGPQYSQEGYASQPNNPPPPTYAPAPS 88
>At2g38800.1 68415.m04764 calmodulin-binding protein-related
contains similarity to potato calmodulin-binding protein
PCBP GI:17933110 from [Solanum tuberosum]
Length = 612
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 366 SEDEVVRTEDLSERSRADRVHGAGLQVDED 277
SE+E V+ +DL E+ + +G +VD D
Sbjct: 221 SEEEFVKMDDLEEKKEFENGNGGSCEVDID 250
>At2g32810.1 68415.m04016 beta-galactosidase, putative / lactase,
putative similar to beta-galactosidase GI:7939617 from
[Lycopersicon esculentum]
Length = 887
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 110 QAGQCGNQIGAKFWEIISDEHGIDPTGAYHG 202
QA G IG ++W IIS + G D T Y G
Sbjct: 678 QAWVNGQHIG-RYWNIISQKDGCDRTCDYRG 707
>At1g53300.1 68414.m06041 thioredoxin family protein contains Pfam
profiles PF00085: Thioredoxin, PF00515: TPR Domain;
similar to tetratricopeptide repeat protein 2
(GI:7248701) [Drosophila melanogaster]; similar to DnaJ
homolog subfamily C member 7 (Tetratricopeptide repeat
protein 2) (TPR repeat protein 2) (Swiss-Prot:Q99615)
[Homo sapiens]
Length = 699
Score = 27.1 bits (57), Expect = 7.9
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Frame = -2
Query: 485 NPWRQSHDSASFRTTSKTESTSSAPSV*CPLAQLLPAPDCPKTKLSGRKICPKGPERTES 306
N R DSA+ ++S ++ S+ S + PAP P L ICP G +
Sbjct: 98 NNLRPRSDSATTSSSSHSQPLLSSSSS----SATSPAPTSPANVLPTGNICPSGKIQITG 153
Query: 305 MVPG-SKSTRMARGT 264
M S+S + GT
Sbjct: 154 MTQSRSRSDVLGSGT 168
>At1g33360.1 68414.m04129 ATP-dependent Clp protease ATP-binding
subunit ClpX, putative similar to CLP protease
regulatory subunit CLPX GI:2674203 from [Arabidopsis
thaliana]
Length = 656
Score = 27.1 bits (57), Expect = 7.9
Identities = 17/44 (38%), Positives = 18/44 (40%)
Frame = -3
Query: 532 CPYRNRCRRRASVSVGIPGGNHTIPLPFERRLKLNRRAQHPPCS 401
CP R R S G GG P+P RR KL P CS
Sbjct: 34 CPRRRIQERFKSEQGGGGGGGDDFPVPVTRR-KLRAEPNCPRCS 76
>At1g09530.2 68414.m01069 phytochrome interacting factor 3 (PIF3)
identical to phytochrome interacting factor 3 (PIF3)
GI:3929585 from [Arabidopsis thaliana]
Length = 524
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -1
Query: 393 GPVVTGAGLSEDEVVRTEDLSERSRADRVH 304
GP TG G +LSER R DR++
Sbjct: 331 GPSRTGLGSKRSRSAEVHNLSERRRRDRIN 360
>At1g09530.1 68414.m01068 phytochrome interacting factor 3 (PIF3)
identical to phytochrome interacting factor 3 (PIF3)
GI:3929585 from [Arabidopsis thaliana]
Length = 524
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -1
Query: 393 GPVVTGAGLSEDEVVRTEDLSERSRADRVH 304
GP TG G +LSER R DR++
Sbjct: 331 GPSRTGLGSKRSRSAEVHNLSERRRRDRIN 360
>At4g01050.1 68417.m00142 hydroxyproline-rich glycoprotein family
protein
Length = 466
Score = 23.4 bits (48), Expect(2) = 8.8
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = -2
Query: 530 PIPEPVPTPS 501
P+PEPVP P+
Sbjct: 410 PVPEPVPVPA 419
Score = 21.8 bits (44), Expect(2) = 8.8
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -2
Query: 533 VPIPEPVPTP 504
VP PEPVP P
Sbjct: 405 VPEPEPVPEP 414
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,222,818
Number of Sequences: 28952
Number of extensions: 254953
Number of successful extensions: 898
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -