Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021206
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...    29   0.52 
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...    29   0.52 
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa...    26   4.8  
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo...    26   4.8  
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi...    26   6.4  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    26   6.4  
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos...    26   6.4  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 29.5 bits (63), Expect = 0.52
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 484 RRIYVVDVLGLW*PLNTRWAVSSSTHLGNKNKTTLN 591
           R +  V  +G W P N +W V+ + + G  ++T LN
Sbjct: 244 RGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLN 279


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 29.5 bits (63), Expect = 0.52
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 484 RRIYVVDVLGLW*PLNTRWAVSSSTHLGNKNKTTLN 591
           R +  V  +G W P N +W V+ + + G  ++T LN
Sbjct: 244 RGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLN 279


>SPAC977.06 |||S. pombe specific DUF999 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 189

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 17/80 (21%), Positives = 38/80 (47%)
 Frame = +1

Query: 61  LIVISTVCRQFKLNNFRTDFSNNKFKNXXXXXXXXXXXXKWF*CCLYVILFVMIYIMMIS 240
           ++++  + + F++ +F + + N  F N             W    +Y+ LFV++ + +I 
Sbjct: 86  ILIVFAIDKNFEVKDFLSIWINESFINENRFYSEI-----WGPIAIYICLFVLLLLGLIY 140

Query: 241 LSIENVPSSKLISMIAFYIV 300
            S   V +  LIS++   +V
Sbjct: 141 CSKIVVKAIPLISIVIAAVV 160


>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
           8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 17/80 (21%), Positives = 38/80 (47%)
 Frame = +1

Query: 61  LIVISTVCRQFKLNNFRTDFSNNKFKNXXXXXXXXXXXXKWF*CCLYVILFVMIYIMMIS 240
           ++++  + + F++ +F + + N  F N             W    +Y+ LFV++ + +I 
Sbjct: 86  ILIVFAIDKNFEVKDFLSIWINESFINENRFYSEI-----WGPIAIYICLFVLLLLGLIY 140

Query: 241 LSIENVPSSKLISMIAFYIV 300
            S   V +  LIS++   +V
Sbjct: 141 CSKIVVKAIPLISIVIAAVV 160


>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 598 CGHLGLFYFYCLDGWTSSQ 542
           CGH+  F + C++GWTS +
Sbjct: 271 CGHI--FCWSCINGWTSKK 287


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 244  SIENVPSSKLISMIAFYIVF*KEITDH 324
            ++E +PS K ++ + F  V  KE +DH
Sbjct: 1168 TVEKLPSDKRVNFVIFTTVESKEASDH 1194


>SPBC1348.07 |||S. pombe specific DUF999 protein family
           6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 16/80 (20%), Positives = 38/80 (47%)
 Frame = +1

Query: 61  LIVISTVCRQFKLNNFRTDFSNNKFKNXXXXXXXXXXXXKWF*CCLYVILFVMIYIMMIS 240
           ++++  + + F++ +F + + N  F N             W    +Y+ LF+++ + +I 
Sbjct: 86  ILIVFAIDKNFEVKDFLSIWINESFINENRFYSEI-----WGPIAIYICLFILLLLGLIY 140

Query: 241 LSIENVPSSKLISMIAFYIV 300
            S   V +  LIS++   +V
Sbjct: 141 CSKIVVKAIPLISIVIAAVV 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,521,672
Number of Sequences: 5004
Number of extensions: 47981
Number of successful extensions: 87
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)