Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021206
         (733 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1170 - 10002650-10004122                                         30   2.2  
12_02_0582 - 20789739-20790182,20794940-20796120,20796450-20796477     28   8.8  
11_04_0057 - 12953479-12954364,12954484-12955034,12955125-129553...    28   8.8  
04_04_0854 + 28762149-28762334,28763218-28763315,28763850-28764174     28   8.8  

>06_01_1170 - 10002650-10004122
          Length = 490

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 333 WFVTHVTWSQTIEI*CRGSTLL 398
           WFVTH  W+ T+E    G T+L
Sbjct: 367 WFVTHCGWNSTLEALAAGVTML 388


>12_02_0582 - 20789739-20790182,20794940-20796120,20796450-20796477
          Length = 550

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +1

Query: 427 NDMMNTETLELISQGTHLFRRIYVVDVLGLW*PLNTRW 540
           ND  N    EL     +L   I  V+VLGL  P+  RW
Sbjct: 429 NDKKNNRFSELAGLPIYLLSCISSVEVLGLGGPVRARW 466


>11_04_0057 -
           12953479-12954364,12954484-12955034,12955125-12955342,
           12957514-12957678,12960562-12960898
          Length = 718

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = -2

Query: 480 KVGTLRYQF*G--LSIHHIIRFEVWDSCY 400
           +VGT ++Q     +SI  II F +W  CY
Sbjct: 495 RVGTKKFQLPAGSISIFEIITFTIWSGCY 523


>04_04_0854 + 28762149-28762334,28763218-28763315,28763850-28764174
          Length = 202

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -1

Query: 607 VHICGHLGLFYFYCLDGWTSSQPTWC*VVTRALRHL 500
           V IC H   F+ YCLD W   Q T C +   +L+ L
Sbjct: 112 VPICHHN--FHLYCLDAWLLKQTT-CPICRISLKEL 144


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,796,117
Number of Sequences: 37544
Number of extensions: 265114
Number of successful extensions: 577
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)