Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021206
         (733 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g55700.1 68416.m06188 UDP-glucoronosyl/UDP-glucosyl transfera...    28   5.6  
At2g26780.1 68415.m03212 expressed protein contains Pfam profile...    28   7.3  
At1g78840.1 68414.m09190 F-box family protein contains F-box dom...    27   9.7  

>At3g55700.1 68416.m06188 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein glucuronosyl transferase homolog,
           Lycopersicon esculentum, PIR:S39507 ;contains Pfam
           profile: PF00201 UDP-glucoronosyl and UDP-glucosyl
           transferase
          Length = 460

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 336 FVTHVTWSQTIEI*CRGSTLLNSSCPTLQ 422
           F TH  W+ T+E  C G  ++ +SC T Q
Sbjct: 348 FWTHCGWNSTLESICEGVPMICTSCFTDQ 376


>At2g26780.1 68415.m03212 expressed protein contains Pfam profile TBP
            (TATA-binding protein) -interacting protein 120 (TIP120);
            contains TIGRFAM profile TIGR01612:  reticulocyte binding
            protein
          Length = 1866

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -3

Query: 146  SKFLNLLFEKSVLKLFNLNCLHTVEITMSH 57
            +KF++ LF   V KL  L C+HTV+I   H
Sbjct: 1778 TKFVHELFHSLVPKL--LECIHTVKIAQFH 1805


>At1g78840.1 68414.m09190 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 439

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 190 CCLYVILFVMIY-IMMISLSIENVPSSKLISMIAFYIVF*KEIT 318
           C L  + FV IY   MIS S+EN   ++L+  I       KE+T
Sbjct: 359 CLLISLKFVTIYSTAMISSSVENQVETELVKYILGNAAVVKELT 402


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,564,584
Number of Sequences: 28952
Number of extensions: 233960
Number of successful extensions: 456
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)