Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021205X
         (625 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   0.79 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   2.4  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        23   2.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.8  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   9.8  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -1

Query: 439 ISFGSFXHFRKHHGLTSSGKKVLSSPLYATLILGLPPSLTTS 314
           +S   + H R+H   T +     SS    +L + +PPS+  S
Sbjct: 23  VSVAGYKHSRRHRDFTVAESYDASSSNSDSLSMTIPPSIDRS 64


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 328 SLTTSKGQXIMSDCTVASSXLRPMSVW 248
           SL +S+ Q   ++C +A   L  +S+W
Sbjct: 261 SLRSSENQNTSAECKLAKVALMTISLW 287


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 328 SLTTSKGQXIMSDCTVASSXLRPMSVW 248
           SL +S+ Q   ++C +A   L  +S+W
Sbjct: 11  SLRSSENQNTSAECKLAKVALMTISLW 37


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = -1

Query: 406 HHGLTSSGKKVLSSPLYA-TLILGLPP 329
           HH    SG    S+PL A TL  GL P
Sbjct: 511 HHVAPPSGHHASSAPLLAATLAGGLCP 537


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
          finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 43 PFCIFNQSCYLFLK 2
          P+C  N SCY  LK
Sbjct: 9  PYCRRNFSCYYSLK 22


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,805
Number of Sequences: 438
Number of extensions: 4053
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)