Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021204
(710 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 137 9e-33
SB_56| Best HMM Match : Actin (HMM E-Value=0) 137 9e-33
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 137 9e-33
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 136 1e-32
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 116 2e-26
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 111 7e-25
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 104 6e-23
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 99 3e-21
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 97 2e-20
SB_54| Best HMM Match : Actin (HMM E-Value=0) 87 1e-17
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 72 4e-13
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 60 2e-09
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 52 3e-07
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 46 3e-05
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 34 0.099
SB_14171| Best HMM Match : Chitin_synth_2 (HMM E-Value=7.7e-07) 31 0.92
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_47412| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 29 3.7
SB_56788| Best HMM Match : 7tm_1 (HMM E-Value=4e-32) 28 6.5
SB_27229| Best HMM Match : 7tm_1 (HMM E-Value=0.0014) 28 6.5
SB_17957| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 137 bits (331), Expect = 9e-33
Identities = 79/209 (37%), Positives = 115/209 (55%), Gaps = 7/209 (3%)
Frame = +2
Query: 104 VVIDNGSGVIKAGFAGDQIPKCRFPNYIGRPKHTRVMAGALEGEIFVGPREKSIA----- 268
+V+DNGSG+ KAGFAGD P+ FP+ +GRP+H VM G + + +VG +S
Sbjct: 8 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 67
Query: 269 --PSQHQIPNGTRNSYRLERHGKDLELYLQ*GPAIYFLRRTPSAVDRSTSEPSQE*RKVR 442
P +H I + ++ H EL + P + P + + P K+
Sbjct: 68 KYPIEHGIVTNWDDMEKIWHHTFYNELRV--APEEH-----PVLLTEAPLNPKANREKMT 120
Query: 443 RNIL*DIQCTGIISFNAGRSQFYATGRTTGAVLDSGDGVTHAVPIYEGFAMPHSIMRVDV 622
+ + + YA+GRTTG V+DSGDGVTH VPIYEG+A+PH+I+R+D+
Sbjct: 121 QIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 180
Query: 623 AGRDVTKYLRLLLRKEGVNLRTSAELEIV 709
AGRD+T YL +L + G + T+AE EIV
Sbjct: 181 AGRDLTDYLMKILTERGYSFTTTAEREIV 209
Score = 111 bits (266), Expect = 7e-25
Identities = 48/76 (63%), Positives = 64/76 (84%)
Frame = +3
Query: 279 IKYPMEHGIVTDWNDMEKIWNYIYSKDQLSTFSEEHPVLLTEAPLNPRRNREKSAEIFFE 458
+KYP+EHGIVT+W+DMEKIW++ + ++L EEHPVLLTEAPLNP+ NREK +I FE
Sbjct: 67 LKYPIEHGIVTNWDDMEKIWHHTFY-NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 125
Query: 459 TFNVPALFLSMQAVLS 506
TFN PA+++++QAVLS
Sbjct: 126 TFNSPAMYVAIQAVLS 141
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 137 bits (331), Expect = 9e-33
Identities = 79/209 (37%), Positives = 115/209 (55%), Gaps = 7/209 (3%)
Frame = +2
Query: 104 VVIDNGSGVIKAGFAGDQIPKCRFPNYIGRPKHTRVMAGALEGEIFVGPREKSIA----- 268
+V+DNGSG+ KAGFAGD P+ FP+ +GRP+H VM G + + +VG +S
Sbjct: 8 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 67
Query: 269 --PSQHQIPNGTRNSYRLERHGKDLELYLQ*GPAIYFLRRTPSAVDRSTSEPSQE*RKVR 442
P +H I + ++ H EL + P + P + + P K+
Sbjct: 68 KYPIEHGIVTNWDDMEKIWHHTFYNELRV--APEEH-----PVLLTEAPLNPKANREKMT 120
Query: 443 RNIL*DIQCTGIISFNAGRSQFYATGRTTGAVLDSGDGVTHAVPIYEGFAMPHSIMRVDV 622
+ + + YA+GRTTG V+DSGDGVTH VPIYEG+A+PH+I+R+D+
Sbjct: 121 QIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 180
Query: 623 AGRDVTKYLRLLLRKEGVNLRTSAELEIV 709
AGRD+T YL +L + G + T+AE EIV
Sbjct: 181 AGRDLTDYLMKILTERGYSFTTTAEREIV 209
Score = 111 bits (266), Expect = 7e-25
Identities = 48/76 (63%), Positives = 64/76 (84%)
Frame = +3
Query: 279 IKYPMEHGIVTDWNDMEKIWNYIYSKDQLSTFSEEHPVLLTEAPLNPRRNREKSAEIFFE 458
+KYP+EHGIVT+W+DMEKIW++ + ++L EEHPVLLTEAPLNP+ NREK +I FE
Sbjct: 67 LKYPIEHGIVTNWDDMEKIWHHTFY-NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 125
Query: 459 TFNVPALFLSMQAVLS 506
TFN PA+++++QAVLS
Sbjct: 126 TFNSPAMYVAIQAVLS 141
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 137 bits (331), Expect = 9e-33
Identities = 79/209 (37%), Positives = 115/209 (55%), Gaps = 7/209 (3%)
Frame = +2
Query: 104 VVIDNGSGVIKAGFAGDQIPKCRFPNYIGRPKHTRVMAGALEGEIFVGPREKSIA----- 268
+V+DNGSG+ KAGFAGD P+ FP+ +GRP+H VM G + + +VG +S
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 68
Query: 269 --PSQHQIPNGTRNSYRLERHGKDLELYLQ*GPAIYFLRRTPSAVDRSTSEPSQE*RKVR 442
P +H I + ++ H EL + P + P + + P K+
Sbjct: 69 KYPIEHGIVTNWDDMEKIWHHTFYNELRV--APEEH-----PVLLTEAPLNPKANREKMT 121
Query: 443 RNIL*DIQCTGIISFNAGRSQFYATGRTTGAVLDSGDGVTHAVPIYEGFAMPHSIMRVDV 622
+ + + YA+GRTTG V+DSGDGVTH VPIYEG+A+PH+I+R+D+
Sbjct: 122 QIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 181
Query: 623 AGRDVTKYLRLLLRKEGVNLRTSAELEIV 709
AGRD+T YL +L + G + T+AE EIV
Sbjct: 182 AGRDLTDYLMKILTERGYSFTTTAEREIV 210
Score = 111 bits (266), Expect = 7e-25
Identities = 48/76 (63%), Positives = 64/76 (84%)
Frame = +3
Query: 279 IKYPMEHGIVTDWNDMEKIWNYIYSKDQLSTFSEEHPVLLTEAPLNPRRNREKSAEIFFE 458
+KYP+EHGIVT+W+DMEKIW++ + ++L EEHPVLLTEAPLNP+ NREK +I FE
Sbjct: 68 LKYPIEHGIVTNWDDMEKIWHHTFY-NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 126
Query: 459 TFNVPALFLSMQAVLS 506
TFN PA+++++QAVLS
Sbjct: 127 TFNSPAMYVAIQAVLS 142
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 136 bits (330), Expect = 1e-32
Identities = 79/209 (37%), Positives = 115/209 (55%), Gaps = 7/209 (3%)
Frame = +2
Query: 104 VVIDNGSGVIKAGFAGDQIPKCRFPNYIGRPKHTRVMAGALEGEIFVGPREKSIA----- 268
+V+DNGSG+ KAGFAGD P+ FP+ +GRP+H VM G + + +VG +S
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 68
Query: 269 --PSQHQIPNGTRNSYRLERHGKDLELYLQ*GPAIYFLRRTPSAVDRSTSEPSQE*RKVR 442
P +H I + ++ H EL + P + P + + P K+
Sbjct: 69 KYPIEHGIVTNWDDMEKIWHHTFYNELRV--APEEH-----PVLLTEAPLNPKANREKMT 121
Query: 443 RNIL*DIQCTGIISFNAGRSQFYATGRTTGAVLDSGDGVTHAVPIYEGFAMPHSIMRVDV 622
+ + + YA+GRTTG V+DSGDGVTH VPIYEG+A+PH+I+R+D+
Sbjct: 122 QIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIIRLDL 181
Query: 623 AGRDVTKYLRLLLRKEGVNLRTSAELEIV 709
AGRD+T YL +L + G + T+AE EIV
Sbjct: 182 AGRDLTDYLMKILTERGYSFTTTAEREIV 210
Score = 111 bits (266), Expect = 7e-25
Identities = 48/76 (63%), Positives = 64/76 (84%)
Frame = +3
Query: 279 IKYPMEHGIVTDWNDMEKIWNYIYSKDQLSTFSEEHPVLLTEAPLNPRRNREKSAEIFFE 458
+KYP+EHGIVT+W+DMEKIW++ + ++L EEHPVLLTEAPLNP+ NREK +I FE
Sbjct: 68 LKYPIEHGIVTNWDDMEKIWHHTFY-NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 126
Query: 459 TFNVPALFLSMQAVLS 506
TFN PA+++++QAVLS
Sbjct: 127 TFNSPAMYVAIQAVLS 142
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 116 bits (279), Expect = 2e-26
Identities = 53/67 (79%), Positives = 61/67 (91%)
Frame = +2
Query: 509 YATGRTTGAVLDSGDGVTHAVPIYEGFAMPHSIMRVDVAGRDVTKYLRLLLRKEGVNLRT 688
YATGRTTG VLD+GDGV+H+VPIYEGFAMPHSIMR D+AGRDV++YLRLLLRKEG +
Sbjct: 169 YATGRTTGVVLDAGDGVSHSVPIYEGFAMPHSIMRTDIAGRDVSRYLRLLLRKEGHCFHS 228
Query: 689 SAELEIV 709
S+ELEIV
Sbjct: 229 SSELEIV 235
Score = 85.4 bits (202), Expect = 4e-17
Identities = 38/42 (90%), Positives = 42/42 (100%)
Frame = +3
Query: 381 EHPVLLTEAPLNPRRNREKSAEIFFETFNVPALFLSMQAVLS 506
+HPVLLTEAPLNPRRNREK+AE+FFETFNVPALF+SMQAVLS
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLS 167
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 111 bits (266), Expect = 7e-25
Identities = 48/76 (63%), Positives = 64/76 (84%)
Frame = +3
Query: 279 IKYPMEHGIVTDWNDMEKIWNYIYSKDQLSTFSEEHPVLLTEAPLNPRRNREKSAEIFFE 458
+KYP+EHGIVT+W+DMEKIW++ + ++L EEHPVLLTEAPLNP+ NREK +I FE
Sbjct: 68 LKYPIEHGIVTNWDDMEKIWHHTFY-NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 126
Query: 459 TFNVPALFLSMQAVLS 506
TFN PA+++++QAVLS
Sbjct: 127 TFNSPAMYVAIQAVLS 142
Score = 87.8 bits (208), Expect = 8e-18
Identities = 67/212 (31%), Positives = 101/212 (47%), Gaps = 12/212 (5%)
Frame = +2
Query: 104 VVIDNGSGVIKAGFAGDQIPKCRFPNYIGRPKHTRVMAGALEGEIFVGPREKSIA----- 268
+VIDNGSG+ KAGFAGD P+ FP+ +GRP+H VM G + + +VG +S
Sbjct: 9 LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 68
Query: 269 --PSQHQIPNGTRNSYRLERHGKDLELYLQ*GPAIYFLRRTPSAVDRSTSEPSQE*RKVR 442
P +H I + ++ H EL + P P + + P K+
Sbjct: 69 KYPIEHGIVTNWDDMEKIWHHTFYNELRV--AP-----EEHPVLLTEAPLNPKANREKMT 121
Query: 443 RNIL*DIQCTGIISFNAGRSQFYATGRTTGAVLDSGDGVTHAVPIYE--GFAMPHSIMRV 616
+ + + YA+GRTTG V+DSGDGV+H VPIYE G++ + R
Sbjct: 122 QIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEERGYSFTTTAERE 181
Query: 617 DVAGRDVTK---YLRLLLRKEGVNLRTSAELE 703
V RD+ + Y+ L +E +S+ +E
Sbjct: 182 IV--RDIKEKLCYVALDFEQEMQTAASSSSIE 211
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 104 bits (250), Expect = 6e-23
Identities = 69/213 (32%), Positives = 101/213 (47%), Gaps = 8/213 (3%)
Frame = +2
Query: 95 NQPVVIDNGSGVIKAGFAGDQIPKCRFPNYIGRPK-HTRVMAGALE-GEIFVGPREKSIA 268
N +V DNG+G +K G+AG P FP+ +GRP + G +E ++ VG +
Sbjct: 6 NSVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEASQLR 65
Query: 269 ---PSQHQIPNGTRNSYRLERHGKDL---ELYLQ*GPAIYFLRRTPSAVDRSTSEPSQE* 430
+ + NG ++ +H D E + P R T + P +
Sbjct: 66 YMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDP-----RNTKVLLTEPPLNPMKNR 120
Query: 431 RKVRRNIL*DIQCTGIISFNAGRSQFYATGRTTGAVLDSGDGVTHAVPIYEGFAMPHSIM 610
K+ + + Q G+ YA G TG V+DSGDGVTH P+YEGFA+PH
Sbjct: 121 EKMIEVMFENYQFEGVYIAIQAVLTLYAQGLLTGVVIDSGDGVTHICPVYEGFALPHLTR 180
Query: 611 RVDVAGRDVTKYLRLLLRKEGVNLRTSAELEIV 709
R+D+AGRD+TKYL L+ G +A+ E V
Sbjct: 181 RLDIAGRDITKYLIKLMLLRGYAFNHTADFETV 213
Score = 83.4 bits (197), Expect = 2e-16
Identities = 32/80 (40%), Positives = 54/80 (67%)
Frame = +3
Query: 279 IKYPMEHGIVTDWNDMEKIWNYIYSKDQLSTFSEEHPVLLTEAPLNPRRNREKSAEIFFE 458
+ YPM++GIV +W+DM+ +W+Y + + +++ VLLTE PLNP +NREK E+ FE
Sbjct: 70 VNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNREKMIEVMFE 129
Query: 459 TFNVPALFLSMQAVLSFMQQ 518
+ +++++QAVL+ Q
Sbjct: 130 NYQFEGVYIAIQAVLTLYAQ 149
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 99.1 bits (236), Expect = 3e-21
Identities = 43/67 (64%), Positives = 56/67 (83%)
Frame = +2
Query: 509 YATGRTTGAVLDSGDGVTHAVPIYEGFAMPHSIMRVDVAGRDVTKYLRLLLRKEGVNLRT 688
YA+GRTTG V+DSGDGVTH VPIYEG+A+PH+I+R+D+AGRD+T YL +L + G + T
Sbjct: 106 YASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIIRLDLAGRDLTDYLMKILTERGYSFTT 165
Query: 689 SAELEIV 709
+AE EIV
Sbjct: 166 TAEREIV 172
Score = 62.9 bits (146), Expect = 2e-10
Identities = 27/53 (50%), Positives = 37/53 (69%)
Frame = +2
Query: 104 VVIDNGSGVIKAGFAGDQIPKCRFPNYIGRPKHTRVMAGALEGEIFVGPREKS 262
+VIDNGSG+ KAGFAGD P+ FP+ +GRP+H VM G + + +VG +S
Sbjct: 8 LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 60
Score = 41.1 bits (92), Expect(2) = 6e-08
Identities = 15/19 (78%), Positives = 19/19 (100%)
Frame = +3
Query: 279 IKYPMEHGIVTDWNDMEKI 335
+KYP+EHGIVT+W+DMEKI
Sbjct: 67 LKYPIEHGIVTNWDDMEKI 85
Score = 33.5 bits (73), Expect(2) = 6e-08
Identities = 14/27 (51%), Positives = 21/27 (77%)
Frame = +3
Query: 426 NREKSAEIFFETFNVPALFLSMQAVLS 506
N + +I FETFN PA+++++QAVLS
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLS 104
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 96.7 bits (230), Expect = 2e-20
Identities = 42/67 (62%), Positives = 55/67 (82%)
Frame = +2
Query: 509 YATGRTTGAVLDSGDGVTHAVPIYEGFAMPHSIMRVDVAGRDVTKYLRLLLRKEGVNLRT 688
YA+GRTTG V DSGDGV+H VPIYEG+A+PH+I+R+D+AGRD+T YL L+ + G + T
Sbjct: 22 YASGRTTGVVFDSGDGVSHNVPIYEGYALPHAILRLDLAGRDLTDYLMKLMTERGYSFTT 81
Query: 689 SAELEIV 709
+AE EIV
Sbjct: 82 TAEREIV 88
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +3
Query: 447 IFFETFNVPALFLSMQAVLS 506
I FE FN PA+++++QAVLS
Sbjct: 1 IMFEAFNSPAVYVAIQAVLS 20
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 87.0 bits (206), Expect = 1e-17
Identities = 34/67 (50%), Positives = 53/67 (79%)
Frame = +2
Query: 509 YATGRTTGAVLDSGDGVTHAVPIYEGFAMPHSIMRVDVAGRDVTKYLRLLLRKEGVNLRT 688
YA+GRTTG V D GDGV+H VP+Y+G+ +PH+ R+D+AGRD+T YL+ L+ + G + ++
Sbjct: 2188 YASGRTTGTVFDCGDGVSHTVPVYDGYWLPHATQRIDLAGRDLTHYLQRLVTERGYSFQS 2247
Query: 689 SAELEIV 709
+AE +I+
Sbjct: 2248 TAEQQII 2254
Score = 69.7 bits (163), Expect = 2e-12
Identities = 29/59 (49%), Positives = 45/59 (76%)
Frame = +3
Query: 330 KIWNYIYSKDQLSTFSEEHPVLLTEAPLNPRRNREKSAEIFFETFNVPALFLSMQAVLS 506
K+W + + DQL E+ PVLLTEAPLNP+ NRE+ ++ FE+FNVP +++++QAV++
Sbjct: 2130 KMWEHAF--DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMA 2186
Score = 46.0 bits (104), Expect = 3e-05
Identities = 19/33 (57%), Positives = 24/33 (72%)
Frame = +2
Query: 104 VVIDNGSGVIKAGFAGDQIPKCRFPNYIGRPKH 202
VVIDNGSG KAG + D+ P+ FP +GRP+H
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRH 2129
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 72.1 bits (169), Expect = 4e-13
Identities = 34/73 (46%), Positives = 50/73 (68%)
Frame = +3
Query: 288 PMEHGIVTDWNDMEKIWNYIYSKDQLSTFSEEHPVLLTEAPLNPRRNREKSAEIFFETFN 467
P++ G++ DW+ EKI +YIYSK+ + + S HP+L++EA N R REK E+ FE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKN-IKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYN 61
Query: 468 VPALFLSMQAVLS 506
VPA FL +VL+
Sbjct: 62 VPAFFLCKNSVLT 74
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/58 (34%), Positives = 35/58 (60%)
Frame = +2
Query: 509 YATGRTTGAVLDSGDGVTHAVPIYEGFAMPHSIMRVDVAGRDVTKYLRLLLRKEGVNL 682
+A GR+ G V+DSG T AVP+++G+ + +I+R +AG +T R + + V +
Sbjct: 76 FANGRSNGLVIDSGATQTSAVPVHDGYVLQQAIVRSPLAGDFITAQCRQMFEETNVEV 133
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 60.1 bits (139), Expect = 2e-09
Identities = 24/59 (40%), Positives = 39/59 (66%)
Frame = +2
Query: 527 TGAVLDSGDGVTHAVPIYEGFAMPHSIMRVDVAGRDVTKYLRLLLRKEGVNLRTSAELE 703
TG V+DSGDGVTH +P+ EG+ + I + +AGRD+T +++ LLR+ + + +E
Sbjct: 62 TGCVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITFFVQQLLREREMGIPPEQSME 120
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 52.4 bits (120), Expect = 3e-07
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +2
Query: 470 TGIISFNAGRSQFYATGRTTGAVLDSGDGVTHAVPIYEGFAMPHSIMRVDVAGRDVTKYL 649
+G++ N YA+G T G L SG T A IYEG + H++ +++ G +T+ L
Sbjct: 760 SGVMHLNQLSLSLYASGMTLGVCLSSGFSCTQAAVIYEGHTLNHTLQTLEIGGHHLTENL 819
Query: 650 RLLLR-KEGVNLRTSAELEIV 709
+ LR + G N +S+ +IV
Sbjct: 820 KQYLRDQRGHNFTSSSGWQIV 840
Score = 45.6 bits (103), Expect = 4e-05
Identities = 17/42 (40%), Positives = 28/42 (66%)
Frame = +2
Query: 95 NQPVVIDNGSGVIKAGFAGDQIPKCRFPNYIGRPKHTRVMAG 220
N+ +V+DNG G+ K GFAGD++P+ P +G P+ ++ G
Sbjct: 700 NRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIG 741
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 46.0 bits (104), Expect = 3e-05
Identities = 20/34 (58%), Positives = 24/34 (70%)
Frame = +2
Query: 101 PVVIDNGSGVIKAGFAGDQIPKCRFPNYIGRPKH 202
P+VID GS + K GFAGD PK FP +GRP+H
Sbjct: 1358 PLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRH 1391
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 34.3 bits (75), Expect = 0.099
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +2
Query: 527 TGAVLDSGDGVTHAVPI 577
TG V+DSGDGVTH +P+
Sbjct: 356 TGCVIDSGDGVTHVIPV 372
Score = 33.5 bits (73), Expect = 0.17
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 282 KYPMEHGIVTDWNDMEKIWNYIYSKDQLSTFSEEHPVLL 398
K+P+ H IV DW+ ME+ W K L E+H LL
Sbjct: 299 KWPIRHAIVEDWDLMERFWEQCIFK-YLRAEPEDHYFLL 336
>SB_14171| Best HMM Match : Chitin_synth_2 (HMM E-Value=7.7e-07)
Length = 1188
Score = 31.1 bits (67), Expect = 0.92
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 587 TPRIWGRRASLHRRSPVQHPWYDLLHKT 504
T R WG R + ++S + PWY+ L KT
Sbjct: 873 TDRSWGTRETKEKKSGAEVPWYEELWKT 900
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 279 IKYPMEHGIVTDWNDMEKIWNYIYSKDQLST-FSEEHPVLLTEAPLNPRRNRE 434
++ P + +VT + E++ ++ +S ++T HPV++TE NP R+
Sbjct: 131 LRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGGVNHPVIMTEPVCNPNYCRQ 183
>SB_47412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/49 (38%), Positives = 22/49 (44%)
Frame = -1
Query: 635 RHARPRRLS*CCAASRTPRIWGRRASLHRRSPVQHPWYDLLHKTENGLH 489
RH R RL +R PR+ RR LH R P H LH+ LH
Sbjct: 157 RHTRRPRLH-----TRRPRLHRRRTRLHTRRPRLHTRRPRLHRRRPRLH 200
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -1
Query: 593 SRTPRIWGRRASLHRRSPVQHPWYDLLHKTENGLH 489
+R PR+ RR LHRR P H H+ LH
Sbjct: 180 TRRPRLHTRRPRLHRRRPRLHTRRPRRHRRRPRLH 214
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 29.1 bits (62), Expect = 3.7
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +3
Query: 288 PMEHGIVTDWNDMEKIWNYIYSKDQLSTFSEE 383
P + G + +W+ ++IW+Y + K+ L +E
Sbjct: 292 PFQKGFLVNWDVEKQIWDYTFGKEGLEDAMDE 323
>SB_56788| Best HMM Match : 7tm_1 (HMM E-Value=4e-32)
Length = 524
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 469 YRHYFFQCRPFSVLCNRSYHGCCTGLRRWSDAR 567
YRH + +P +VLC+ C TG +D++
Sbjct: 107 YRHGYISSQPPTVLCHFHLSSCLTGQTAMNDSK 139
>SB_27229| Best HMM Match : 7tm_1 (HMM E-Value=0.0014)
Length = 309
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 469 YRHYFFQCRPFSVLCNRSYHGCCTGLRRWSDAR 567
YRH + +P +VLC+ C TG +D++
Sbjct: 99 YRHGYISSQPPTVLCHFHLSSCLTGQTAMNDSK 131
>SB_17957| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 892
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = -2
Query: 496 ACIERNNAGTLNVSKNISADFSLFLRGFRGASVNSTGCSSE 374
A R + +L +S++ + + +R FRGA + +TG SS+
Sbjct: 662 ASFGRKASSSLALSEDHKGEVAYVIRNFRGAVIRNTGNSSD 702
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,788,871
Number of Sequences: 59808
Number of extensions: 510318
Number of successful extensions: 1503
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1490
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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