Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021203
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    28   1.3  
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom...    27   2.9  
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    26   5.1  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    26   6.7  

>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 625 TSDNKSEWCLKSAVQPAVRANSAGDYNGGQAGGNSALPLRDSHHRP 762
           T+ +K+E    S  +P     S G+ + G   GN +LPL +  H+P
Sbjct: 109 TAPSKTEPSTPSTEKPEPSTPS-GESDHGSNAGNESLPLLEEDHKP 153


>SPAC1834.07 |klp3|krp1|kinesin-like protein
           Klp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 20/66 (30%), Positives = 26/66 (39%)
 Frame = +3

Query: 96  LSTLSPHDNVFKAESCFDTAFGCESLAMIYK*ELTSNVRVTLIVHGEPVYSREHSKRATV 275
           LSTL    N           +    L  I K  L  N R TLI++  P         +T+
Sbjct: 257 LSTLGMVINSLTDSKLSHVPYRDSKLTRILKESLGGNSRTTLIINCSPDSYNATETLSTL 316

Query: 276 RYGGRA 293
           R+G RA
Sbjct: 317 RFGHRA 322


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
            Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -2

Query: 605  LAIVAPKDKK-KVGKQLETDKH*KKLNGTRKH 513
            LAI  P +KK KVGK ++  KH KKLN    H
Sbjct: 953  LAIKNPMNKKAKVGK-VDFRKHEKKLNKASMH 983


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 607 N*RSWLRKIKKRLENSWKQISTKKN*TEHENIKF 506
           N RSW+   K RL    K   +KKN   +EN++F
Sbjct: 634 NQRSWVTLKKHRLLARLKSRISKKNSKVNENLRF 667


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,043,576
Number of Sequences: 5004
Number of extensions: 58352
Number of successful extensions: 152
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)