Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021203
         (762 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,127...    30   2.3  
03_02_0257 + 6907997-6908504,6909316-6909348,6910163-6910308           29   5.3  
01_01_0206 - 1770622-1771347                                           28   9.3  

>02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,
            1279204-1279336,1279425-1279551,1279788-1280284,
            1280578-1280642,1280722-1280823,1281020-1281162,
            1281761-1281816,1282214-1282869,1282975-1283165,
            1283280-1283574,1283738-1283778,1284082-1284104,
            1284173-1284369,1284472-1284581,1285309-1285639,
            1285968-1286060,1286095-1286166,1286626-1286886
          Length = 1788

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -3

Query: 484  MITPGIESFRTHLHNLVVPARGALRSDVAAISYTDLTH*KLVFLGLA 344
            +   G++ FRT L  L+   + A R + A+  Y  L + K  F GLA
Sbjct: 983  LFNQGLKDFRTPLEELLSVIQNASRKEGASTCYRMLVYLKYCFQGLA 1029


>03_02_0257 + 6907997-6908504,6909316-6909348,6910163-6910308
          Length = 228

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 619 WKTSDNKSEWCLKSAVQPAVRANS 690
           W T   + +WC + A QPA R +S
Sbjct: 121 WPTRARRRQWCARLAAQPARRGSS 144


>01_01_0206 - 1770622-1771347
          Length = 241

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 670 PAVRANSAGDYNGGQAGGNSALPLRDSHHRP 762
           P +R+ SAG     Q GG   +     HHRP
Sbjct: 144 PLMRSRSAGSAAAAQGGGLGGVVSGGGHHRP 174


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,936,344
Number of Sequences: 37544
Number of extensions: 393539
Number of successful extensions: 1000
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)