Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021203
         (762 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12855| Best HMM Match : TPR_2 (HMM E-Value=2.3e-12)                 38   0.012
SB_53157| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_27516| Best HMM Match : DUF827 (HMM E-Value=0.33)                   29   4.1  
SB_43263| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_30088| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_21963| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_12855| Best HMM Match : TPR_2 (HMM E-Value=2.3e-12)
          Length = 567

 Score = 37.5 bits (83), Expect = 0.012
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = +3

Query: 228 HGEPVYSREHSKRATVRYGGRATPSVRTRGNNIYPRLLAASP 353
           HG+P+Y R H      RY G  TP+ R  G+ IYPR    +P
Sbjct: 478 HGQPLYPRYHRHTPDPRYYGH-TPAPRYNGHAIYPRYRGHTP 518


>SB_53157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 285

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = +3

Query: 288 RATPSVRTRGNNIYPRLLAASPKKTNF*CVKSV*LIAATSDRRAPRA 428
           +A   +RT+   + PR LAAS K+     +KS  L+ A S RR  RA
Sbjct: 109 KAARPLRTKSAAVVPRELAASTKRDLSHGLKSSWLMTARSSRRLFRA 155


>SB_27516| Best HMM Match : DUF827 (HMM E-Value=0.33)
          Length = 253

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -3

Query: 286 PPYLTVARFECSRE*TGSPCTMSVTLTFDVSSHLYIIARLSQPNAVSKQLS 134
           P Y+  A F  S+     PC   V     ++ HL+   ++ +PNA  K  S
Sbjct: 177 PTYIKTASFGDSKIACHGPCGSLVRQLKPIADHLFTTHQIGKPNASKKSQS 227


>SB_43263| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -3

Query: 190 HLYIIARLSQPNAVSKQLSALNTLS*GESVLSNTKSI*SLRYKSPHFIV 44
           +++ ++R + P AV   L    TLS   S ++  K++   +YK   F V
Sbjct: 111 YMFFVSRTAVPGAVELHLLETGTLSVIRSCVNKAKALQGWKYKGESFYV 159


>SB_30088| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 349 VLRKPIFNVSSQYSLLLLRQIGERLEQELQGY 444
           +L K   +V   Y L + R + ERL  E++GY
Sbjct: 158 ILDKKSVSVKRDYLLAIFRHVDERLVMEIRGY 189


>SB_21963| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 504

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 490 GLMITPGIESFRTHLHNLVVPARGALRSDVAAISYTDLT 374
           GL++TPG+     HL    +  +G + S+ AA +   +T
Sbjct: 129 GLVVTPGLVDLCAHLREPGLTQKGNIASETAAAAAAGIT 167


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,309,080
Number of Sequences: 59808
Number of extensions: 457594
Number of successful extensions: 987
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)