Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021203
         (762 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110479-17|CAB54363.3|  177|Caenorhabditis elegans Hypothetical...    31   1.2  

>AL110479-17|CAB54363.3|  177|Caenorhabditis elegans Hypothetical
           protein Y105C5B.18 protein.
          Length = 177

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -3

Query: 550 ISTKKN*TEHENIKFIKVVNGLMITPGIESFRTHLHNLVV-PARGALRSDVAAISYTDLT 374
           ++ K+N TE+E    I ++NG+     I+    ++H LV  PA  +L      IS  D+T
Sbjct: 19  VTVKRNMTEYEQKIHINLLNGIRQKNAIDEQVANMHELVYDPALESLSYPECEISNDDIT 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,059,547
Number of Sequences: 27780
Number of extensions: 338626
Number of successful extensions: 923
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)