Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021203
         (762 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   5.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   7.1  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   9.4  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 6/22 (27%), Positives = 13/22 (59%)
 Frame = -3

Query: 670 VVPHSSNTTPTCYHSFSTVISN 605
           ++  + +  P  YH F TV+++
Sbjct: 156 IIERNGDKPPLTYHQFQTVVAS 177


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 732 SRVSSCLAAIVVTG*ISSDSWLYRTLQTP 646
           S +S+ L+ +VVT  IS+  WL    + P
Sbjct: 56  SGLSAMLSLVVVTVAISTGEWLLTEEKLP 84


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 348 LQQVTVGKCYSRVYEPTAS 292
           L  +T GKC  R +EP ++
Sbjct: 408 LHALTSGKCEHRPFEPKST 426


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,284
Number of Sequences: 438
Number of extensions: 4069
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)