Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021203
         (762 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55050.1 68414.m06288 expressed protein ; expression supporte...    29   4.5  
At5g10880.1 68418.m01263 tRNA synthetase-related / tRNA ligase-r...    28   5.9  
At3g58070.1 68416.m06473 zinc finger (C2H2 type) family protein ...    28   7.8  

>At1g55050.1 68414.m06288 expressed protein ; expression supported
           by MPSS
          Length = 914

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 398 CYVRSESASSRNYKVMQMSSERFYTRG 478
           CY+RS S+SS + K   + + RF +RG
Sbjct: 410 CYLRSPSSSSTHMKFTVVDTSRFASRG 436


>At5g10880.1 68418.m01263 tRNA synthetase-related / tRNA
           ligase-related similar to SP|P07814 Bifunctional
           aminoacyl-tRNA synthetase [Includes: Glutamyl-tRNA
           synthetase (EC 6.1.1.17) (Glutamate--tRNA ligase);
           Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA
           ligase)] {Homo sapiens}; contains Pfam profile PF03129:
           Anticodon binding domain
          Length = 309

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 646 WCLKSAVQPAVRANSAGDYNGGQAGGNSAL 735
           WC K  V+  V+  + GD  GG  GG   L
Sbjct: 248 WCDKVEVEKDVKRRTRGDETGGGGGGAKTL 277


>At3g58070.1 68416.m06473 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 253

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 646 WCLKSAVQPAVRANSAGDYNGGQAGGNSALPL 741
           W L   VQ    +N+A   NG  +  NS LPL
Sbjct: 180 WRLPPRVQGVYNSNAAFTSNGSSSSSNSTLPL 211


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,906,037
Number of Sequences: 28952
Number of extensions: 308639
Number of successful extensions: 672
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)