Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021202
(757 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 30 0.31
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ... 30 0.41
SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual 28 1.3
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb... 28 1.7
SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr... 27 2.9
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa... 27 3.8
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|... 27 3.8
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 26 5.0
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch... 26 5.0
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 26 5.0
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy... 26 6.7
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 26 6.7
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 25 8.8
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 25 8.8
SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces pom... 25 8.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 8.8
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 25 8.8
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 30.3 bits (65), Expect = 0.31
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +3
Query: 285 SSDVLDVEPSIAPPAQEEHPVVEQGNADAEDEMDIDETASGAMNEESAYIG-DNCLSTP 458
SSDVL ++ S AQ E P VE +AEDEM + + S A NEE + D +S P
Sbjct: 853 SSDVLPMKGS----AQREVPDVEDA-IEAEDEMLEEASDSEAANEEDIDLSKDKFISVP 906
>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 293
Score = 29.9 bits (64), Expect = 0.41
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 282 SSSDVLDVEPSIAPPAQEEHPVVEQGNADAEDEMDIDETAS-GAMNEESAYIG 437
SS+D+ +E +IAP HP + NA + +D T S G + ES +G
Sbjct: 230 SSNDITVIESTIAPQQATTHPPSQPKNAVSVPIPKMDSTDSKGELPSESLVLG 282
>SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 296
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 378 EMDIDETASGAMNEESAYIGDNCLSTPADTEENS 479
EMD+ +G + EES DN + P DT++N+
Sbjct: 35 EMDVQSLLTGEL-EESYTKADNSIVVPTDTQKNT 67
>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 394
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +3
Query: 351 EQGNADAEDEMDIDETASGAMNEESAYIGDNCLSTPADT 467
E+G+AD EDE D D S + + C STP T
Sbjct: 237 EEGSADEEDEEDSDVELSESSLSDDEDSPLRCPSTPVQT 275
>SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 178
Score = 27.1 bits (57), Expect = 2.9
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +1
Query: 100 TKMESDPAT-HSDSHDGAEVSPQADNQDNQVADTIDDLPDNNSASDDVTTEPENLLRMVV 276
TK E A + ++ + E+SP DNQ+ T L +N ++ ++ E +
Sbjct: 63 TKKELKKAKMNGNAVNSKELSPNTDNQNTPAGPTKHSLDENEKDKENKKSKKETVSSPAE 122
Query: 277 QLAA 288
QL A
Sbjct: 123 QLLA 126
>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
Trk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 841
Score = 26.6 bits (56), Expect = 3.8
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Frame = -3
Query: 395 FIYVHFIFSICITLFNYRMLFLSRRCNRRLYVQNIAAASWTTIRSKFSGSVVTSSLA--- 225
F+ +H+I+ I +T+ +LF + Y+ + AS T ++ + SV +SL+
Sbjct: 19 FLAIHYIYIISLTIIASILLFTGGTTTKIKYIDALFLASSATTQTGLN-SVDLNSLSIWQ 77
Query: 224 -ELLSGKSSIVSATWL 180
+L G ++I W+
Sbjct: 78 QFILYGFTAITVPIWM 93
>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
Prp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 906
Score = 26.6 bits (56), Expect = 3.8
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +3
Query: 273 GPTSSSDVLDVEPSIAPPAQEE-HPVVEQGNADAEDEMDIDETASGAMNEESAY 431
G T + D+ P+ P+QE +EQ ++ E+E DID NE + +
Sbjct: 24 GATGFTTRSDLGPAQELPSQESIKAAIEQRKSEIEEEEDIDPRYQDPDNEVALF 77
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 324 PAQEEHPVVEQGNADAEDE-MDIDETASGAMNE 419
P++EE EQ N D++DE + ID +GA+ E
Sbjct: 154 PSEEELQEPEQENIDSDDEDLAIDGFGAGAIAE 186
>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
Atf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +2
Query: 500 STRSMIKEPESEEAEGLGDAEESPDQSISSAILPTDSGVGEVEGA-PSVQDDEI 658
+T S + PE+ +++ + Q+ S+ + + G G V A P+ Q D +
Sbjct: 23 ATASSTQVPENNQSDSFAPPSNNSQQNQQSSTIAPNGGAGSVANANPADQSDGV 76
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 112 SDPATHSDSHDGAEVSPQADNQDNQVADTIDDLPDNNSASDD 237
SD + + S D ++ + Q D+ + D DD +NN DD
Sbjct: 194 SDSSNYHTSTDSSQYNDQDDHVYDDTNDGTDDDINNNEYKDD 235
>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 274
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 351 EQGNADAEDEMDIDETASGAMNEESAYIGDNCLSTPADTE 470
EQG+ D EDE + AS A E+ I + L++ + E
Sbjct: 111 EQGHVDEEDEERCRKMASDASEEKDRKIEEGELTSEEEKE 150
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 282 SSSDVLDVEPSIAPPAQEEHPVVEQGNADAEDEMDIDETA 401
SS D PSIA ++ PV +++ +EMD+ A
Sbjct: 234 SSHSSQDFTPSIANAHEKNEPVAPSKDSNLTEEMDLQMEA 273
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 25.4 bits (53), Expect = 8.8
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +1
Query: 103 KMESDPATHSDSHDGAEVSPQADNQDNQVADTIDDLPDNNSASDDVTTEPE 255
K+ES + A++ DNQD + ++ + NNSA D +P+
Sbjct: 55 KLESSVGEQESATKRAKIENLKDNQDLIPNNDVNGIHINNSAVADTKHKPK 105
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 25.4 bits (53), Expect = 8.8
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +1
Query: 148 AEVSPQADNQDNQVADTIDDLPDNNSASDDVTTEP 252
A SPQ N D+Q A T +D N +T P
Sbjct: 334 ASYSPQNSNFDHQAAATTNDAHQNVVRGSAITIAP 368
>SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 217
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = +1
Query: 109 ESDPATHSDSHDGAEVSPQADNQDNQVADTIDDLPDNNSASDDV 240
E + T ++ + E+S Q ++N +A+ DD + DD+
Sbjct: 134 EQEEKTDNEDDNDVEISTQESLENNGLAEKKDDTSSLATLEDDI 177
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.4 bits (53), Expect = 8.8
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +2
Query: 494 RQSTRSMIKEPESEEAEGLGDAEESPDQSISSAILPTDSGVGEVEGAPSVQDDE 655
R++T SEEA+ + P S S++ PT+ + APS +++E
Sbjct: 455 RKNTLRRTPAKSSEEAKSTTNDSSPPKDSSSTSTQPTEQ--SNAQQAPSPKEEE 506
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 25.4 bits (53), Expect = 8.8
Identities = 18/47 (38%), Positives = 21/47 (44%)
Frame = +3
Query: 300 DVEPSIAPPAQEEHPVVEQGNADAEDEMDIDETASGAMNEESAYIGD 440
D P + P A EE E+ AD E E + DE G EE GD
Sbjct: 165 DDAPPVQPDADEEE---EEEEAD-EMEEEFDEEGEGDEEEEEEDDGD 207
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,674,777
Number of Sequences: 5004
Number of extensions: 48373
Number of successful extensions: 219
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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