Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021202
(757 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0379 + 24828928-24829258,24829945-24829996,24830366-24830546 31 0.99
12_02_0579 + 20764626-20765123,20765135-20766064,20767181-207672... 30 2.3
11_03_0113 - 10162288-10162560 30 2.3
08_01_0341 + 3011238-3011246,3011824-3012192,3012412-3012505,301... 30 2.3
06_03_0710 + 23792138-23792293,23792974-23793257,23794344-237944... 29 3.0
09_04_0375 - 17055024-17055956,17056045-17056296 29 4.0
07_02_0012 - 11770058-11770770,11770919-11771000,11771064-117710... 29 4.0
03_06_0138 + 31940606-31940708,31940792-31940897,31941739-319418... 29 4.0
01_04_0126 + 16397069-16397842 29 4.0
11_08_0035 - 27838495-27838655,27838750-27838897,27838987-278391... 29 5.3
10_02_0023 + 4306350-4306908,4308429-4308814,4308917-4308991,430... 29 5.3
03_05_0127 + 21069312-21069668,21070023-21072830,21072975-21073178 29 5.3
04_04_0616 - 26638438-26638638,26638890-26638971,26639054-266391... 28 7.0
04_01_0160 + 1830671-1830779,1830898-1830971,1831374-1831671,183... 28 7.0
01_06_1097 + 34507376-34507395,34509380-34511214,34511263-345115... 28 7.0
10_05_0019 - 8049145-8049334,8059808-8060618,8060708-8060783,806... 28 9.2
09_03_0110 + 12432562-12432801,12432811-12433419 28 9.2
07_03_0873 + 22194172-22195434,22195534-22195670,22197531-221976... 28 9.2
07_01_0116 - 855122-855352,856733-857059,857095-858481,858636-85... 28 9.2
05_07_0118 + 27811125-27811180,27811724-27811733,27814651-278147... 28 9.2
04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093 28 9.2
02_05_1127 + 34292894-34293284,34293948-34295443 28 9.2
02_02_0156 - 7277793-7277875,7278535-7278638,7278808-7279211,727... 28 9.2
01_01_0018 + 139150-140415 28 9.2
>04_04_0379 + 24828928-24829258,24829945-24829996,24830366-24830546
Length = 187
Score = 31.1 bits (67), Expect = 0.99
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = +1
Query: 106 MESDPATHSDSHDG-AEVSPQADNQDNQV--ADTIDDLPDNNSASDDVT 243
+E+DP THS+ + E D +D++ A+ +D DNN+ SD+ T
Sbjct: 136 VEADPITHSEEQNNEEEEDSDKDEEDSESDGAEYMDTDDDNNTESDEDT 184
>12_02_0579 +
20764626-20765123,20765135-20766064,20767181-20767275,
20767342-20767384,20767869-20768231
Length = 642
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/71 (29%), Positives = 33/71 (46%)
Frame = +3
Query: 270 GGPTSSSDVLDVEPSIAPPAQEEHPVVEQGNADAEDEMDIDETASGAMNEESAYIGDNCL 449
GG S S + + + +APP +EE E A+ E+E+ A+ A++EE + L
Sbjct: 191 GGRPSRSALEEEQAEVAPPVEEEED-EEVSPAEGEEEL---PPAAMAVDEEDVAVAPVVL 246
Query: 450 STPADTEENSP 482
D E P
Sbjct: 247 EEAVDEELELP 257
>11_03_0113 - 10162288-10162560
Length = 90
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 169 DNQDNQVADTIDDLP-DNNSASDDVTTEPEN 258
D+ DN + D +DD P D++ A DD+ +P++
Sbjct: 26 DDPDNDLEDDLDDDPDDDDGAPDDLDNDPDD 56
>08_01_0341 +
3011238-3011246,3011824-3012192,3012412-3012505,
3012594-3012631,3012862-3013008,3013912-3014011,
3014615-3015042,3015234-3015389
Length = 446
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = -3
Query: 350 NYRMLFLSRRCNRRLYVQNIAAASWTTIRSKFSGSVVTSSLAELLSGKSSIVSA 189
N+++L ++ +CN L + A +W T + +F G V + + G S V A
Sbjct: 297 NHKLLPVTEKCNDHLAADSSAEDNWVTRKGEFLGIFVCNHFCKPAQGLLSPVIA 350
>06_03_0710 +
23792138-23792293,23792974-23793257,23794344-23794499,
23795318-23795804,23795864-23796181,23796773-23797165,
23797752-23798021
Length = 687
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = -1
Query: 328 AGGAIEGSTSKTSLLLVGPPFAASSQAQWSHRHLLNYCQANHR 200
A G ++G +S SLLL AAS + H++ Y QA HR
Sbjct: 327 ATGNLDGISSPASLLLPSAA-AASPDSPEFRSHVIKYLQARHR 368
>09_04_0375 - 17055024-17055956,17056045-17056296
Length = 394
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 267 NGGPTSSSDVLDVEPSIAPPAQEEHPVVEQGNADA 371
+GG T+SS L + +PP Q++H E+ +A
Sbjct: 281 SGGSTTSSSSLTIAEEPSPPPQQQHLAGEKSGGEA 315
>07_02_0012 -
11770058-11770770,11770919-11771000,11771064-11771072,
11771630-11771877,11772006-11772183,11772270-11772278
Length = 412
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +2
Query: 518 KEPESEEAEGLGDAEESPDQSISSAILPTDSGVGEVEGAPSVQDDEIQYNG 670
++ E EEA+ + D +E P++ + GE + + +D+ YNG
Sbjct: 268 EKKEGEEADQMKDQKEEPEEKEKKEEPDEKNEGGEADDLKPLTEDDASYNG 318
>03_06_0138 +
31940606-31940708,31940792-31940897,31941739-31941838,
31942913-31942958,31943580-31943689
Length = 154
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 255 ELAANGGPTSSSDVLDVEPSIAPPAQEEHPV-VEQGNADAEDEMDIDE 395
E AA+ P + D LDV ++ EHP +EQ + +E+ + +DE
Sbjct: 17 ERAAHPHPADAIDALDVFDTVRDIKDPEHPYSLEQLSVLSEESVSVDE 64
>01_04_0126 + 16397069-16397842
Length = 257
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +2
Query: 512 MIKEPESEEAEGLGDAEESPDQSISSAILPTDSGVGEVEGAPSV 643
+I P+ +E G G+A D S+++ ++P G + AP++
Sbjct: 9 LIDMPQPQETNGDGEAAPEADISMATTLMPNGVGERKATAAPAL 52
>11_08_0035 - 27838495-27838655,27838750-27838897,27838987-27839192,
27839291-27839972,27840074-27840247,27840963-27841181,
27841281-27841400,27841540-27841680,27841762-27841801,
27841969-27842129,27842506-27842589,27842659-27842721,
27842808-27842885,27842980-27842984,27843228-27843313,
27843354-27843544,27844089-27844166,27844255-27844365,
27844757-27844927,27845026-27845198,27845748-27845928
Length = 1090
Score = 28.7 bits (61), Expect = 5.3
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +1
Query: 133 DSHDGAEVSPQADNQDNQVADTIDDLPDNNSASDDVTTEPENLLRMVVQLAAA 291
D DGAE D+ D + DT +D D N SDD E + + AAA
Sbjct: 963 DDGDGAE-DLDDDDDDEEEEDTDEDDEDYNQDSDDDDVREETEEEFLQRYAAA 1014
>10_02_0023 +
4306350-4306908,4308429-4308814,4308917-4308991,
4309330-4309539,4309649-4309961,4310035-4310130,
4310220-4310357,4310436-4310536,4310645-4310712,
4310800-4310849,4311790-4311848,4312399-4312530
Length = 728
Score = 28.7 bits (61), Expect = 5.3
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Frame = +3
Query: 300 DVEPSIAPPAQEEHP----VVEQGNADAEDEMDIDETASGAMNEESAYIGDNCLSTPADT 467
D EP A ++E P + E+ DA+ E ++E A ++EE A D D+
Sbjct: 137 DEEPEEAEVEEDEEPEELEMEEEEPEDADSEESMEEEAGSEVSEEEAAADDMKEIADKDS 196
Query: 468 EE 473
EE
Sbjct: 197 EE 198
>03_05_0127 + 21069312-21069668,21070023-21072830,21072975-21073178
Length = 1122
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 125 LTAILTMARKCR-LKPITRITRLPILSMICLTIIQQV 232
L I+ + C+ L P+ + RL ILSM C+T ++ V
Sbjct: 819 LAKIILCQQSCKFLPPLGELPRLRILSMECMTDVEHV 855
>04_04_0616 -
26638438-26638638,26638890-26638971,26639054-26639141,
26639222-26639278,26641334-26641526
Length = 206
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Frame = +3
Query: 303 VEPSIAPPAQEEHPVVEQGNADA-----EDEMDIDETASGAMNE 419
V P+ APPA+EE P V+ A A DE ++ A G N+
Sbjct: 39 VIPAPAPPAEEEKPPVDDSKALAIVEKVADEPPAEKPAQGGSND 82
>04_01_0160 +
1830671-1830779,1830898-1830971,1831374-1831671,
1831900-1832867,1833504-1833716,1834034-1834237,
1835063-1835104
Length = 635
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +3
Query: 321 PPAQEEHPVVEQGNADAEDEMDIDETASGAMNEESAYIGDNC 446
PP++ H + N D+++EM + SG ++S + C
Sbjct: 66 PPSESNHAISHGSNTDSKEEM---SSGSGYRRQQSCFSSSTC 104
>01_06_1097 +
34507376-34507395,34509380-34511214,34511263-34511598,
34511800-34513691
Length = 1360
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 121 ATHSDS--HDGAEVSPQADNQDNQVADTIDDLPDNNSASDD 237
+TH D+ D ++ +QD+Q D +D DNN A ++
Sbjct: 383 STHPDTIPKDDSDTDSHVSSQDHQTDDDSNDETDNNDAKEN 423
>10_05_0019 -
8049145-8049334,8059808-8060618,8060708-8060783,
8060856-8061008
Length = 409
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 327 AQEEHPVVEQ-GNADAEDEMDIDETASGAMNEESAYIGDNCLSTPADTEENSP 482
A +E V E+ GN + E+E E A + + + + +NC+ TP T SP
Sbjct: 160 ADDEDDVKERDGNEEGEEE----EKAEAVVEKAADEVVENCVDTPGYTPTPSP 208
>09_03_0110 + 12432562-12432801,12432811-12433419
Length = 282
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -1
Query: 721 MSLTSSRLATPPSAISSSIVLDF 653
+S+ + LA PPSA SS +V+DF
Sbjct: 139 ISVGGAPLAIPPSAFSSGMVIDF 161
>07_03_0873 +
22194172-22195434,22195534-22195670,22197531-22197639,
22197739-22197865,22197952-22198012,22199332-22199722
Length = 695
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +3
Query: 270 GGPTSSSDVLDVEPSIAPPAQEEHPVVEQGNAD-AEDEMDIDETASGAMNEES 425
G S + +DVE + +EE + + D ED+ D + +GA EE+
Sbjct: 67 GASESEGEAMDVEAKESADEKEEEEAEAEADGDEGEDKSDEMDAEAGAAEEEA 119
>07_01_0116 -
855122-855352,856733-857059,857095-858481,858636-858895
Length = 734
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Frame = +3
Query: 324 PAQEEHP----VVEQGNADAEDEMDIDETASGAMNEESAYIGD 440
P QE HP VVE N D E +DE + E +GD
Sbjct: 649 PKQEHHPGSSEVVELSNWDMEFRRHLDEHRQNDLGELKGLVGD 691
>05_07_0118 +
27811125-27811180,27811724-27811733,27814651-27814707,
27814816-27814986,27815101-27815185,27815811-27815901,
27815975-27816139,27816563-27816682,27816774-27816846,
27817725-27817884,27817968-27818833,27819143-27819229
Length = 646
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -3
Query: 755 SSAEYLLCGTTNVVDIITAGNPSFSYIFIHCTGF 654
S A + G + D GNP FSY HC+GF
Sbjct: 384 SDASNSILGVPRLGDRAPLGNPGFSY---HCSGF 414
>04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093
Length = 1040
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 621 KLKEHQAFKMMKSSTMDEDIAEGGVASRDDVNDISSAAQEILSTG 755
KL+ QA ++ +DI +SRD +ND+ A ++L +G
Sbjct: 87 KLEMTQAKDLIDEQDEADDINGKDESSRDVINDVGIAVNDVLMSG 131
>02_05_1127 + 34292894-34293284,34293948-34295443
Length = 628
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +1
Query: 190 ADTIDDLPDNNSASDDVTTEPENLLRMVVQLAAAMF 297
ADT++ LP+ ++ DVT + + L++ AA F
Sbjct: 234 ADTVEGLPEGAESTADVTPDKDGLVKKACDGLAAPF 269
>02_02_0156 -
7277793-7277875,7278535-7278638,7278808-7279211,
7279403-7279543,7279700-7279904,7279984-7280093
Length = 348
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +1
Query: 130 SDSHDGAEVSPQADNQDNQVADTIDDLPDNNSASDDVTTEPENLLRMVVQLA 285
SD+ DG + +AD+ + VAD + N +A + +T + ++ + A
Sbjct: 251 SDASDGISMGAEADSSVSNVADQEQEKTSNTAAKERLTRAVNRVQKLTLPKA 302
>01_01_0018 + 139150-140415
Length = 421
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -3
Query: 335 FLSRRCNRRLYVQNIAAASWTTIRSKFSGSVVTSSLAELLSGKSS 201
FLS+ C L+VQ +A +W + +S ++ + +AE ++ S
Sbjct: 69 FLSKMCE--LFVQELAVRAWASAQSHNRCIILDTDIAEAIASTES 111
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,691,748
Number of Sequences: 37544
Number of extensions: 334024
Number of successful extensions: 1327
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1323
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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