Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021202
(757 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4347| Best HMM Match : CXCXC (HMM E-Value=7.9) 33 0.19
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.44
SB_29621| Best HMM Match : Halo_GVPC (HMM E-Value=5.3) 32 0.44
SB_43229| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_54258| Best HMM Match : ubiquitin (HMM E-Value=0.00055) 31 1.0
SB_38913| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_30252| Best HMM Match : Nucleoplasmin (HMM E-Value=0.54) 31 1.3
SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_22851| Best HMM Match : Sad1_UNC (HMM E-Value=0) 30 1.8
SB_12596| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33) 30 2.3
SB_55970| Best HMM Match : Ion_trans_2 (HMM E-Value=8.7e-12) 30 2.3
SB_51002| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_21709| Best HMM Match : F5_F8_type_C (HMM E-Value=8.7e-21) 29 3.1
SB_11461| Best HMM Match : NHL (HMM E-Value=0) 29 3.1
SB_24596| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_7993| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91) 29 5.4
SB_47646| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_27282| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_5939| Best HMM Match : BAH (HMM E-Value=7.9e-18) 29 5.4
SB_23116| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_667| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_45010| Best HMM Match : Chromadorea_ALT (HMM E-Value=7.3) 28 7.1
SB_25949| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_16516| Best HMM Match : SDA1 (HMM E-Value=0.95) 28 7.1
SB_51365| Best HMM Match : ig (HMM E-Value=0.00037) 28 9.4
SB_23023| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_17729| Best HMM Match : TPR_2 (HMM E-Value=0.41) 28 9.4
SB_7554| Best HMM Match : zf-CXXC (HMM E-Value=6.5e-08) 28 9.4
SB_46888| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_20267| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
>SB_4347| Best HMM Match : CXCXC (HMM E-Value=7.9)
Length = 295
Score = 33.5 bits (73), Expect = 0.19
Identities = 18/48 (37%), Positives = 29/48 (60%)
Frame = +2
Query: 104 KWNRTLLLTAILTMARKCRLKPITRITRLPILSMICLTIIQQVTM*PL 247
K TLLL LT+ K L P+ ++T P+L + LT++ ++T+ PL
Sbjct: 102 KLTLTLLLKLALTLLLKLTLTPLLKLTLTPLLK-LTLTLLLKLTLTPL 148
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +2
Query: 116 TLLLTAILTMARKCRLKPITRITRLPILSMICLTIIQQVTM 238
TLLL LT+ K L P+ ++T P+L + LT + ++T+
Sbjct: 66 TLLLKLTLTLLLKLTLAPLLKLTLTPLLK-LTLTPLLKLTL 105
>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4856
Score = 32.3 bits (70), Expect = 0.44
Identities = 16/32 (50%), Positives = 24/32 (75%)
Frame = +3
Query: 345 VVEQGNADAEDEMDIDETASGAMNEESAYIGD 440
VVEQ ++D E + D ++TASG +NEES +G+
Sbjct: 2948 VVEQTSSDKETDGDQEDTASG-INEESEVLGE 2978
>SB_29621| Best HMM Match : Halo_GVPC (HMM E-Value=5.3)
Length = 471
Score = 32.3 bits (70), Expect = 0.44
Identities = 16/32 (50%), Positives = 24/32 (75%)
Frame = +3
Query: 345 VVEQGNADAEDEMDIDETASGAMNEESAYIGD 440
VVEQ ++D E + D ++TASG +NEES +G+
Sbjct: 174 VVEQTSSDKETDGDQEDTASG-INEESEVLGE 204
>SB_43229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 154
Score = 31.5 bits (68), Expect = 0.76
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +1
Query: 133 DSHDGAEVSPQADNQDNQVADTIDDLPDNNSASD 234
D+HD A+ AD DN AD DD DN+ A D
Sbjct: 13 DNHDNADDKDDAD--DNDDADDNDDADDNDDADD 44
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 112 SDPATHSDSHDGAEVSPQADNQDNQVADTIDDLPDNNSASDD 237
+D +D +D A+ + AD DN AD DD+ DN+ D+
Sbjct: 18 ADDKDDADDNDDADDNDDAD--DNDDADDKDDVDDNDDVDDN 57
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = +1
Query: 103 KMESDPATHSDSHDGAEVSPQADNQD----NQVADTIDDLPDNNSASD 234
K ++D +D +D A+ + AD++D N D DD+ DN+ A D
Sbjct: 21 KDDADDNDDADDNDDADDNDDADDKDDVDDNDDVDDNDDVDDNDDADD 68
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +1
Query: 115 DPATHSDSHDGAEVSPQADNQDNQVADTIDDLPDNNSASDD 237
D D D +V D DN AD DD DN+ D+
Sbjct: 41 DADDKDDVDDNDDVDDNDDVDDNDDADDKDDADDNDDVDDN 81
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +1
Query: 115 DPATHSDSHDGAEVSPQADNQDNQVADTIDDLPDNNSASD 234
D + D D + + D DN D DD+ DN+ A D
Sbjct: 53 DVDDNDDVDDNDDADDKDDADDNDDVDDNDDVDDNDDADD 92
>SB_54258| Best HMM Match : ubiquitin (HMM E-Value=0.00055)
Length = 411
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Frame = +3
Query: 330 QEEHPVVE-----QGNADAEDEMDIDETASGAMNEESAYIGDNCLSTPADTE 470
+EE+PV QGN D+E++ + +TAS NEE+A + P + E
Sbjct: 31 EEENPVKSEGAENQGNLDSEEKTEDKQTASDLTNEENAESKEITADQPTNNE 82
>SB_38913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 63
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +1
Query: 109 ESDPATHSDSHDGAEVSPQADNQDNQVADTIDDLPDNNSASDDVTTEPEN 258
+SD ++ D + DN D+ D DD DNN DD + E+
Sbjct: 4 DSDDGDDDENDDNDDDDDDDDNDDDDDEDDDDDEDDNNDDDDDDDDDDED 53
>SB_30252| Best HMM Match : Nucleoplasmin (HMM E-Value=0.54)
Length = 281
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +1
Query: 100 TKMESDPATHSDSHDGAEVSPQADNQDNQVADTIDDLPDNNSASDDVTTEPE 255
T D T SD DG + D+ D+ D DD D++ DD E +
Sbjct: 124 TSQGQDSLTKSDDDDGGDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDNEDD 175
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +1
Query: 100 TKMESDPATHSDSHDGAEVSPQADNQDNQVADTIDDLPDNNSASDD 237
TK + DP+ S D S D D+ D DD D++ DD
Sbjct: 115 TKSQVDPSGTSQGQDSLTKSDDDDGGDDDDDDDDDDDDDDDDDDDD 160
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = +1
Query: 97 ITKMESDPATHSDSHDGAEVSPQADNQDNQVADTIDDLPDNNSASDDVTTEPENLLRMVV 276
+TK + D D D + D+ D+ D DD D+N DD++ P ++V
Sbjct: 131 LTKSDDDDGGDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDN--EDDMSFFPSKDCSLLV 188
Query: 277 QL 282
+L
Sbjct: 189 RL 190
>SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2978
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Frame = +3
Query: 270 GGPTSSSDVLD----VEPSIAPPAQEEHPVVEQGNADAEDEMDIDET 398
GG +S VLD E S P + HP++E G ++D +D DET
Sbjct: 2784 GGQFASVVVLDEVGLAEDSPLMPLKTLHPLLEDGVTSSDDVIDADET 2830
>SB_22851| Best HMM Match : Sad1_UNC (HMM E-Value=0)
Length = 1705
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +2
Query: 509 SMIKEPESEEAEGLGDAEESPDQSISSAILPTD--SGVGEVEGAPSV 643
SM++E E E +G D E + ILP+D + VG+ G P++
Sbjct: 709 SMVEELEEHEGDGQDDQESVDQDDETVQILPSDPAAKVGDQTGKPNI 755
>SB_12596| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = -2
Query: 279 LDHHSQQVLRLSGHIVTC*IIVRQIIDSIGNLVILVIGLRRHFRAIVRIAV 127
L HH + ++ +I+T II+ II I ++I+V L + AI+ IA+
Sbjct: 23 LHHHHHHTITITTNIITAIIIINAIIIVI-IIIIIVTTLTVNINAIIIIAI 72
>SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)
Length = 2822
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +1
Query: 112 SDPATHSDSHDGAEVSPQADNQDNQVADTIDDLPDNNSASDDVTTEPENLLRMVVQLAAA 291
+D SDS EVSP++D+ QV + + A ++V+ EP L ++ AAA
Sbjct: 1354 ADQGASSDSGSSQEVSPRSDHDSTQVKEQ-QVGGEQQEAEEEVSPEPLVLEGSEMEAAAA 1412
>SB_55970| Best HMM Match : Ion_trans_2 (HMM E-Value=8.7e-12)
Length = 434
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 133 DSHDGAEVSPQADNQDNQVADTIDDLPDNNSASDD 237
D+HD + + D+ +N V D D+ D+N DD
Sbjct: 43 DNHDVDDDNHDVDDDNNDVGDDNHDVDDDNDVGDD 77
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 127 HSDSHDGAEVSPQADNQDNQVADTIDDLPDNNSASDD 237
H D+HD + + D+ ++ V D D+ D+N DD
Sbjct: 20 HDDNHDVGDENHDVDDYNHDVDDDNHDVDDDNHDVDD 56
>SB_51002| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1888
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 100 TKMESDPATHSDSHDGAEVSPQAD-NQDNQVADTIDDLPDNNSASDDVTT 246
T ++D T +D+ + + D N DN + D DN++ SD+ TT
Sbjct: 251 TTSDNDTTTDNDTTSDNDTTTNNDTNSDNDTTTSNDTTSDNDTTSDNDTT 300
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +1
Query: 112 SDPATHSDS-HDGAEVSPQADNQDNQVADTIDDLPDNNSASDDVTTEPEN 258
+D A+ +D+ D S DN D DNN+ SD+ TT N
Sbjct: 9 NDKASDNDTTSDNNTTSDNDTTSDNDTTSDNDTTADNNTTSDNDTTADNN 58
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 100 TKMESDPATHSDSHDGAEVSPQAD-NQDNQVADTIDDLPDNNSASDDVTT 246
T ++D + +D+ E + D N DN D DN++ SD+ TT
Sbjct: 71 TTSDNDTTSDNDTTSDNETTSDNDTNSDNDTTSDNDKTSDNDTTSDNDTT 120
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +1
Query: 112 SDPATHSDSHDGAEVSPQADNQ---DNQVADTIDDLPDNNSASDDVTT 246
SD T SD+ ++ +DN DN D DNN+ SD+ TT
Sbjct: 19 SDNNTTSDNDTTSDNDTTSDNDTTADNNTTSDNDTTADNNTTSDNNTT 66
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +1
Query: 112 SDPATHSDSHDGAEVSPQADNQ---DNQVADTIDDLPDNNSASDDVTTEPEN 258
SD T SD+ ++ +DN DN D DN++ SD+ TT N
Sbjct: 79 SDNDTTSDNETTSDNDTNSDNDTTSDNDKTSDNDTTSDNDTTSDNDTTSDNN 130
>SB_21709| Best HMM Match : F5_F8_type_C (HMM E-Value=8.7e-21)
Length = 532
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Frame = +1
Query: 121 ATHSDSHDGAEVSPQADNQDNQVADTIDDLP-----DNNSASDDVTTEPENLLRMVVQLA 285
A D HD + D+ D+ D DD D++ A DD+TT ++ M++ +
Sbjct: 247 AAADDDHDDDDDDDDDDDDDDDDDDDDDDDDDDDDVDDDDADDDLTTTTTTMVMMLMMMT 306
Query: 286 AAMFWT 303
M T
Sbjct: 307 MTMTMT 312
>SB_11461| Best HMM Match : NHL (HMM E-Value=0)
Length = 819
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = +2
Query: 518 KEPESEEAEGLGDAEESPDQSISSAILPTDSGVGEVEGAPSVQDDEIQYNG*RYS 682
+E E EG+G EE PD+S S + EG P+ + + G RYS
Sbjct: 633 QEENKEPLEGMGGGEEEPDRSSDSQSTGCVDDYIDNEGKPNRGSNSVS-RGYRYS 686
>SB_24596| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1907
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = +1
Query: 100 TKMESDPATHSDSHDGAEVSPQADNQDNQVADTIDDLPDNNSASDD 237
T D T SD DG + D+ D+ D DD D+N D
Sbjct: 1436 TSQGQDSLTKSDDDDGGDGGDDDDDDDDDDDDDDDDDDDDNGFGGD 1481
>SB_7993| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 676
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 103 KMESDPATH-SDSHDGAEVSPQADNQDNQVADTIDDLPDNNSASDDVTTEPEN 258
KME++ A SD E S +++NQD + A ++ + + DD TT +N
Sbjct: 320 KMENNAAQSVSDPKSRTEGSAESENQDGKSATSVTGKEASGTNKDDGTTLKDN 372
>SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91)
Length = 1249
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/50 (38%), Positives = 22/50 (44%)
Frame = +1
Query: 97 ITKMESDPATHSDSHDGAEVSPQADNQDNQVADTIDDLPDNNSASDDVTT 246
+T SD T SD S DNQV + D+P SASDD T
Sbjct: 672 VTPSASDVPTTSDDQVTPSASDVPAASDNQVTPSASDVP---SASDDQVT 718
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +1
Query: 97 ITKMESDPATHSDSHDGAEVSPQADNQDNQVADTIDDLPDNNSASDDVTT 246
+T SD T SD H S D+QV + D+P + SDD T
Sbjct: 569 VTPSASDVPTTSDDHVTPSASDVPTTSDDQVTPSASDVP---TTSDDQVT 615
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +1
Query: 97 ITKMESDPATHSDSHDGAEVSPQADNQDNQVADTIDDLPDNNSASDDVTT 246
+T SD T SD H S D+QV + D+P +ASD+ T
Sbjct: 657 VTPSASDVPTTSDDHVTPSASDVPTTSDDQVTPSASDVP---AASDNQVT 703
>SB_47646| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 79
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = +1
Query: 109 ESDPATHSDSHDGAEVSPQADNQDNQVADTIDDLPDNNSAS---DDVTTEPENLLRMVVQ 279
E D D+ + ++ ++N D+ D D +NN+ + DD+ + +NL V
Sbjct: 14 EHDDEIKEDNKNDDDIDEDSNNDDDDDVDYDDSYNNNNNGNNDHDDINDDNDNLADNNVD 73
Query: 280 LAAA 291
L +A
Sbjct: 74 LTSA 77
>SB_27282| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 644
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/46 (30%), Positives = 18/46 (39%)
Frame = +1
Query: 100 TKMESDPATHSDSHDGAEVSPQADNQDNQVADTIDDLPDNNSASDD 237
T SD D D +++ P AD D D DN+ DD
Sbjct: 428 TPSSSDNDDTQDDDDKSDIQPNADGVDKTPYDGTPSSSDNDDTQDD 473
>SB_5939| Best HMM Match : BAH (HMM E-Value=7.9e-18)
Length = 1086
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 136 SHDGAEVSPQADNQDNQVADTIDDLPDNNSASDDVTTEPENLLR 267
SH+ A +SP +++ + D+ DD+ D+ S S T ++ LR
Sbjct: 619 SHEPAPISPANNSKRRKSNDSDDDIRDDVSESSSATGGRDSTLR 662
>SB_23116| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 325
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 169 DNQDNQVADTIDDLPDNNSASDDVTTEPEN 258
D+ DN D DD DNN+ +DD + N
Sbjct: 132 DDDDNNKNDNDDDYDDNNNNNDDYDDDNNN 161
>SB_667| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 101
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +1
Query: 112 SDPATHSDSHDGAEVSPQADNQDNQVADTIDDLPDNNSASDDVTTEPEN 258
SD + D H G D+ D+ +D D D N SDD + + ++
Sbjct: 26 SDDDSDDDYHAGVGDGDDCDDDDSSGSDDDGDDDDKNGGSDDDSDDDDH 74
>SB_45010| Best HMM Match : Chromadorea_ALT (HMM E-Value=7.3)
Length = 214
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/65 (24%), Positives = 29/65 (44%)
Frame = +1
Query: 109 ESDPATHSDSHDGAEVSPQADNQDNQVADTIDDLPDNNSASDDVTTEPENLLRMVVQLAA 288
+ D + D D + D+ D+ D+ DD D+N DD T+ ++ +V+ +
Sbjct: 12 DGDNSNDDDDDDSYDDDDDDDSNDDDDDDSNDDNDDSNDDDDD-GTDDCMIMTIVMMMIV 70
Query: 289 AMFWT 303
M T
Sbjct: 71 MMMMT 75
>SB_25949| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 501
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +1
Query: 127 HSDSHDGAEVSPQADN--QDNQVADTIDDLPDNNSASDDVTTEPEN 258
H D DG + D+ D+ D DD+ D + DD+ + +N
Sbjct: 238 HDDIDDGKDSHDDIDDGTDDHDDTDDHDDIDDGTDSHDDIDDDTDN 283
>SB_16516| Best HMM Match : SDA1 (HMM E-Value=0.95)
Length = 1656
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +1
Query: 103 KMESDPATHSDSHDGAEVSPQADNQDNQVADTIDDLPDNNSASD 234
K + D A H D D + D+ +NQ D DD D++ D
Sbjct: 1201 KKQGD-ADHEDKEDSGDQDNNCDDTENQDKDDDDDSKDDDKDDD 1243
>SB_51365| Best HMM Match : ig (HMM E-Value=0.00037)
Length = 498
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -3
Query: 332 LSRRCNRRLYVQNIAAASWTTIRSKFSGSVVTSSLAELLSGKSSI 198
L+R CN YV+ + ++S TT S + ++V+S + LS + I
Sbjct: 245 LTRACNTSSYVKELQSSSITT-SSSTTNNLVSSDATQSLSSSAHI 288
>SB_23023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 505
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 145 GAEVSPQADNQDNQVADTIDDLPDNNS 225
G PQA ++ NQ+ +T DD+ NS
Sbjct: 118 GTGNDPQAQSEQNQIQETSDDIGTENS 144
>SB_17729| Best HMM Match : TPR_2 (HMM E-Value=0.41)
Length = 1234
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +2
Query: 104 KWNRTLLLTAILTMARKCRLKPITRITRLPILSMICLTIIQQVTM*PL 247
K TLLL L K L P+ ++T P+L + LT + ++T+ PL
Sbjct: 143 KLTLTLLLKLTLAPLLKLTLTPLLKLTLTPLLK-LTLTPLLKLTLTPL 189
>SB_7554| Best HMM Match : zf-CXXC (HMM E-Value=6.5e-08)
Length = 343
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 518 KEPESEEAEGLGDAEESPDQ-SISSAILPTDSGVGEVEGAPSVQDDE 655
K P+S+E EG+ D+ E ++ + + TD V +P +DD+
Sbjct: 188 KTPDSDENEGMSDSNERENKPQPFNTHMDTDEEVESKPASPECKDDK 234
>SB_46888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 626
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +1
Query: 103 KMESDPATHSDSHDGAEVSPQADNQDNQVADTIDDLPDNNSASDDVTTEPEN 258
K D D DG + DN D+ D DD DN+ +DD + +N
Sbjct: 524 KERYDDDNDDDDDDGDDDDDDVDNDDDD--DDDDDDDDNDGDNDDDDNDNDN 573
>SB_20267| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 415
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +1
Query: 112 SDPATHSDSHDGAEVSPQADNQDNQVADTIDDLPDNNSASDDVTTEPEN 258
+D ++D++D + + DN DN + +D DNN +D+ N
Sbjct: 237 NDNNGNNDNYDNNDNNDNNDNNDNNDNNDNNDKNDNNDNNDNYNNNGNN 285
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,204,595
Number of Sequences: 59808
Number of extensions: 375279
Number of successful extensions: 2258
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2169
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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