Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021202
         (757 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            23   2.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   4.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   4.1  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   4.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.4  

>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 100 TKMESDPATHSDSHDGAEVSPQADNQ 177
           +KME DPAT  D+        QADNQ
Sbjct: 83  SKMEIDPATQKDA---GYYECQADNQ 105


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 116 TLLLTAILTMARKCRLKPITRITRLPILSMICLTII 223
           TLL  A  T      L P++    + I + +CLT +
Sbjct: 280 TLLTMATQTSGINASLPPVSYTKAIDIWTGVCLTFV 315


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 116 TLLLTAILTMARKCRLKPITRITRLPILSMICLTII 223
           TLL  A  T      L P++    + I + +CLT +
Sbjct: 280 TLLTMATQTSGINASLPPVSYTKAIDIWTGVCLTFV 315


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 18/56 (32%), Positives = 24/56 (42%)
 Frame = +3

Query: 585 VLPFYQQIVV*VKLKEHQAFKMMKSSTMDEDIAEGGVASRDDVNDISSAAQEILST 752
           V+P YQ  V   + K  +      S+TM+     GG+ S      I  A  E LST
Sbjct: 257 VVPEYQCAVKRKEEKAQKEKDKPNSTTMNGSPGSGGIRSDQMGVKIEPAEAESLST 312


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 599 PTDSGVGEVEGAPSVQDDE 655
           P DSGV +VE + S   +E
Sbjct: 245 PADSGVSDVESSTSSGGNE 263


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,189
Number of Sequences: 438
Number of extensions: 3076
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)