Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021202
(757 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27050.1 68415.m03250 ethylene-insensitive3-like1 (EIL1) iden... 30 1.9
At5g22650.2 68418.m02647 expressed protein non-consensus AT dono... 29 3.3
At5g22650.1 68418.m02646 expressed protein non-consensus AT dono... 29 3.3
At5g15020.1 68418.m01761 paired amphipathic helix repeat-contain... 29 4.4
At4g32330.2 68417.m04600 expressed protein 29 4.4
At4g32330.1 68417.m04599 expressed protein 29 4.4
At4g12740.1 68417.m02001 adenine-DNA glycosylase-related / MYH-r... 29 4.4
At3g09170.1 68416.m01088 Ulp1 protease family protein contains P... 29 4.4
At1g34610.1 68414.m04301 Ulp1 protease family protein contains P... 29 4.4
At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putati... 29 4.4
At1g24490.1 68414.m03084 60 kDa inner membrane family protein si... 28 5.8
At4g29940.1 68417.m04259 pathogenesis-related homeodomain protei... 28 7.7
At4g04960.1 68417.m00721 lectin protein kinase, putative similar... 28 7.7
At3g27390.1 68416.m03424 expressed protein 28 7.7
At1g19430.1 68414.m02421 dehydration-responsive protein-related ... 28 7.7
>At2g27050.1 68415.m03250 ethylene-insensitive3-like1 (EIL1)
identical to ethylene-insensitive3-like1 GI:2224927 from
[Arabidopsis thaliana]
Length = 584
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/38 (50%), Positives = 23/38 (60%)
Frame = +3
Query: 282 SSSDVLDVEPSIAPPAQEEHPVVEQGNADAEDEMDIDE 395
SSS LDV P P E+ PVVE + +DEMD+DE
Sbjct: 17 SSSTSLDVCPL---PQAEQEPVVEDVDY-TDDEMDVDE 50
>At5g22650.2 68418.m02647 expressed protein non-consensus AT donor
splice site at exon 3, AC acceptor splice site at exon
4;
Length = 223
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Frame = +3
Query: 258 LAANGGPTSSSDVLDVEPSIAP----PAQEEHPVVEQGNADAEDEMDIDETASGAMNEES 425
+ ANG ++ D +P P PA+E+ E+ +D EDE + D+ + M+ +
Sbjct: 38 VTANGNAGAAVVKADTKPKAKPAEVKPAEEKPESDEEDESDDEDESEEDDDSEKGMDVDE 97
Query: 426 AYIGDNCLSTPADTEE 473
D+ D EE
Sbjct: 98 DDSDDDEEEDSEDEEE 113
>At5g22650.1 68418.m02646 expressed protein non-consensus AT donor
splice site at exon 3, AC acceptor splice site at exon
4;
Length = 306
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Frame = +3
Query: 258 LAANGGPTSSSDVLDVEPSIAP----PAQEEHPVVEQGNADAEDEMDIDETASGAMNEES 425
+ ANG ++ D +P P PA+E+ E+ +D EDE + D+ + M+ +
Sbjct: 121 VTANGNAGAAVVKADTKPKAKPAEVKPAEEKPESDEEDESDDEDESEEDDDSEKGMDVDE 180
Query: 426 AYIGDNCLSTPADTEE 473
D+ D EE
Sbjct: 181 DDSDDDEEEDSEDEEE 196
>At5g15020.1 68418.m01761 paired amphipathic helix repeat-containing
protein similar to transcription co-repressor Sin3
[Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 1377
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = +3
Query: 273 GPTSSSDVLDVEPSIAPPAQEEHPVVEQG--NADAEDEMDIDETASGAMNEESAYIGDNC 446
G + + V+ + + A+ EH V +G + DA+DE D + +G + IGD C
Sbjct: 976 GDSEDNFVVYEDRELKATAKTEHSVEAEGENDEDADDEDGDDASEAGEDASGTESIGDEC 1035
Query: 447 LSTPADTEE 473
EE
Sbjct: 1036 SQDDNGVEE 1044
>At4g32330.2 68417.m04600 expressed protein
Length = 436
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +3
Query: 324 PAQEEHPVVEQGNADAEDEMDIDETASGAMNEESA 428
P +EE V NAD ED ET S MNE+ A
Sbjct: 391 PTEEEAQVTVSSNADVEDS---HETVSPRMNEDRA 422
>At4g32330.1 68417.m04599 expressed protein
Length = 437
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +3
Query: 324 PAQEEHPVVEQGNADAEDEMDIDETASGAMNEESA 428
P +EE V NAD ED ET S MNE+ A
Sbjct: 392 PTEEEAQVTVSSNADVEDS---HETVSPRMNEDRA 423
>At4g12740.1 68417.m02001 adenine-DNA glycosylase-related /
MYH-related similar to MYH (GI:18845094) [Rattus
norvegicus]; similar to adenine-DNA glycosylase
(GI:12656850) [Mus musculus]; contains TIGRFAM profile
TIGR01084: A/G-specific adenine glycosylase (hits below
the trusted cutoff)
Length = 630
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 458 CRY*REFAPK*SRQSTRSMIKEPESEEAEGLGDAEESPDQS 580
CR +E + R++ R +E ++EEAE D EE+ ++S
Sbjct: 57 CREKKEAEREAEREAEREAEEEEKAEEAEAEADKEEAEEES 97
>At3g09170.1 68416.m01088 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 1000
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/45 (26%), Positives = 19/45 (42%)
Frame = +3
Query: 348 VEQGNADAEDEMDIDETASGAMNEESAYIGDNCLSTPADTEENSP 482
V Q D +DEMD+D + A E G+ + ++ P
Sbjct: 365 VNQAKGDGDDEMDVDGSGVAAEEREECAAGEGVDGLDGEANKDGP 409
>At1g34610.1 68414.m04301 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 997
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/45 (26%), Positives = 19/45 (42%)
Frame = +3
Query: 348 VEQGNADAEDEMDIDETASGAMNEESAYIGDNCLSTPADTEENSP 482
V Q D +DEMD+D + A E G+ + ++ P
Sbjct: 365 VNQAKGDGDDEMDVDGSGVAAEEREECAAGEGVDGLDGEANKDGP 409
>At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putative
(COX6b) nearly identical to subunit 6b of cytochrome c
oxidase [Arabidopsis thaliana] GI:6518353
Length = 191
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +3
Query: 327 AQEEHPVVEQGNADAEDEMDIDETASGAMNEESAYIGDNCLSTPADTEENS 479
A+EE PV E+ + E++ + ++ +E A DN TPA EEN+
Sbjct: 52 AKEESPV-EEAVSVVEEKSESAPESTEVASEAPAAAEDNAEETPAAAEENN 101
>At1g24490.1 68414.m03084 60 kDa inner membrane family protein similar
to chloroplast membrane protein (ALBINO3) (GI:3927828)
[Arabidopsis thaliana]
Length = 1013
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +2
Query: 500 STRSMIKEPESEEAEGLGDAEESPDQSISSAILPTDSGVGEVEGAPSVQDDE 655
S ++ K E +E E ++ SA+ T G V G PS+Q DE
Sbjct: 939 SNQNTDKAHEQDEKSDTAIVAEDDKKTELSAVDETSDGTVAVNGKPSIQKDE 990
>At4g29940.1 68417.m04259 pathogenesis-related homeodomain protein
(PRHA) identical to Pathogenesis-related homeodomain
protein (PRHA) (SP:P48785) [Arabidopsis thaliana)
Length = 796
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +1
Query: 103 KMESDPATHSDSHDGAEVSPQADNQDNQVADTIDD-LPDNNSASDDVTTEPEN 258
K D T S G E + + + N+V DT+DD +P A++ P N
Sbjct: 518 KQPGDSKTVSGGDSGPEAVMENNTETNEVQDTLDDTVPPGFDATNQNILSPCN 570
>At4g04960.1 68417.m00721 lectin protein kinase, putative similar to
receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733; contains protein kinase domain,
Pfam:PF00069; contains legume lectins alpha and beta
domains, Pfam:PF00138 and Pfam:PF00139
Length = 686
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -3
Query: 302 VQNIAAASWTTIRSKFS--GSVVTSSLAELLSGKSSIVSATW 183
VQ+ +W+ S FS S++T+ L + K SIV A W
Sbjct: 245 VQSHKILAWSFSNSNFSLSNSLITTGLPSFVLPKDSIVKAKW 286
>At3g27390.1 68416.m03424 expressed protein
Length = 588
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 205 DLPDNNSASDDVTTEPENLLRMVVQL 282
DL DNNSA D+ TEP ++++ ++
Sbjct: 533 DLKDNNSAKDESITEPPAPVKIISRI 558
>At1g19430.1 68414.m02421 dehydration-responsive protein-related low
similarity to early-responsive to dehydration stress
ERD3 protein [Arabidopsis thaliana] GI:15320410;
contains Pfam profile PF03141: Putative
methyltransferase
Length = 724
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +1
Query: 109 ESDPATHSDSHDGAEVSPQADNQDNQVADTIDDLPDNNSASDDVTTEPEN 258
ESD + S+ DG E ++D + + D D++SAS D E +N
Sbjct: 146 ESDDSDQSNKEDGEE-GTESDGNEGESDGNGDGSVDDSSASVDEEVEEKN 194
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,052,447
Number of Sequences: 28952
Number of extensions: 258823
Number of successful extensions: 1068
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -