Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021200
         (719 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    25   0.62 
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    23   1.9  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    23   1.9  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    23   3.3  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    23   3.3  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    23   3.3  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    23   3.3  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    23   3.3  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    23   3.3  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           23   3.3  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    23   3.3  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   5.8  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    21   7.6  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    21   7.6  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   7.6  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 25.0 bits (52), Expect = 0.62
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -3

Query: 141 AVILTRTSPAFGGSTSISSMDSGLPASHATAAKHLITLP 25
           A ILT+TSP      + +S  S   +   TAA HL   P
Sbjct: 148 APILTKTSPTPVSINNNTSTSSSASSPSVTAAPHLRDSP 186


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 16/49 (32%), Positives = 19/49 (38%)
 Frame = -3

Query: 246 TLYTIPPPSCPSTTGNTPSGSFPESVYASVWQTPVAVILTRTSPAFGGS 100
           TLY   P  C     N PS S P      VW+  +  +  R  P F  S
Sbjct: 332 TLYFRMPHKCNGNAHNCPSRSHP------VWEIVMNELDRRDDPTFDES 374


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 16/49 (32%), Positives = 19/49 (38%)
 Frame = -3

Query: 246 TLYTIPPPSCPSTTGNTPSGSFPESVYASVWQTPVAVILTRTSPAFGGS 100
           TLY   P  C     N PS S P      VW+  +  +  R  P F  S
Sbjct: 339 TLYFRMPHKCNGNAHNCPSRSHP------VWEIVMNELDRRDDPTFDES 381


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = -3

Query: 231 PPPSCPSTTGNTPSGSFPESVYASVWQTPVAVILTRTSPAFGGSTSISSMDSGLPASHAT 52
           PP S P  +  TPS S   +  +S   +P++V    TSP    +TS +S +   PAS  +
Sbjct: 122 PPRSTPPLS--TPSNS--NATKSSGLTSPLSV---STSPPGKPATSTTSQNLSSPASSTS 174

Query: 51  A 49
           +
Sbjct: 175 S 175



 Score = 21.4 bits (43), Expect = 7.6
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 255 SSPTLYTIPPPSCPSTTGNTPSGSFPESVYASVWQTPVA 139
           +SP   +  PP  P+T+  + + S P S  +S   T  A
Sbjct: 144 TSPLSVSTSPPGKPATSTTSQNLSSPASSTSSTSSTEKA 182


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = -3

Query: 231 PPPSCPSTTGNTPSGSFPESVYASVWQTPVAVILTRTSPAFGGSTSISSMDSGLPASHAT 52
           PP S P  +  TPS S   +  +S   +P++V    TSP    +TS +S +   PAS  +
Sbjct: 122 PPRSTPPLS--TPSNS--NATKSSGLTSPLSV---STSPPGKPATSTASQNLSSPASSTS 174

Query: 51  A 49
           +
Sbjct: 175 S 175


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = -3

Query: 231 PPPSCPSTTGNTPSGSFPESVYASVWQTPVAVILTRTSPAFGGSTSISSMDSGLPASHAT 52
           PP S P  +  TPS S   +  +S   +P++V    TSP    +TS +S +   PAS  +
Sbjct: 122 PPRSTPPLS--TPSNS--NATKSSGLTSPLSV---STSPPGKPATSTASQNLSSPASSTS 174

Query: 51  A 49
           +
Sbjct: 175 S 175


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = -3

Query: 231 PPPSCPSTTGNTPSGSFPESVYASVWQTPVAVILTRTSPAFGGSTSISSMDSGLPASHAT 52
           PP S P  +  TPS S   +  +S   +P++V    TSP    +TS +S +   PAS  +
Sbjct: 122 PPRSTPPLS--TPSNS--NATKSSGLTSPLSV---STSPPGKPATSTASQNLSSPASSTS 174

Query: 51  A 49
           +
Sbjct: 175 S 175


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = -3

Query: 231 PPPSCPSTTGNTPSGSFPESVYASVWQTPVAVILTRTSPAFGGSTSISSMDSGLPASHAT 52
           PP S P  +  TPS S   +  +S   +P++V    TSP    +TS +S +   PAS  +
Sbjct: 122 PPRSTPPLS--TPSNS--NATKSSGLTSPLSV---STSPPGKPATSTASQNLSSPASSTS 174

Query: 51  A 49
           +
Sbjct: 175 S 175


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = -3

Query: 231 PPPSCPSTTGNTPSGSFPESVYASVWQTPVAVILTRTSPAFGGSTSISSMDSGLPASHAT 52
           PP S P  +  TPS S   +  +S   +P++V    TSP    +TS +S +   PAS  +
Sbjct: 78  PPRSTPPLS--TPSNS--NATKSSGLTSPLSV---STSPPGKPATSTASQNLSSPASSTS 130

Query: 51  A 49
           +
Sbjct: 131 S 131


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = -3

Query: 231 PPPSCPSTTGNTPSGSFPESVYASVWQTPVAVILTRTSPAFGGSTSISSMDSGLPASHAT 52
           PP S P  +  TPS S   +  +S   +P++V    TSP    +TS +S +   PAS  +
Sbjct: 122 PPRSTPPLS--TPSNS--NATKSSGLTSPLSV---STSPPGKPATSTASQNLSSPASSTS 174

Query: 51  A 49
           +
Sbjct: 175 S 175


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = -3

Query: 231 PPPSCPSTTGNTPSGSFPESVYASVWQTPVAVILTRTSPAFGGSTSISSMDSGLPASHAT 52
           PP S P  +  TPS S   +  +S   +P++V    TSP    +TS +S +   PAS  +
Sbjct: 122 PPRSTPPLS--TPSNS--NATKSSGLTSPLSV---STSPPGKPATSTASQNLSSPASSTS 174

Query: 51  A 49
           +
Sbjct: 175 S 175


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 234  IPPPSCPSTTGNTPSGSFP 178
            +PPPS  S  G+T S S P
Sbjct: 1111 VPPPSGSSGPGSTGSKSPP 1129


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 216 PSTTGNTPSGSFPESVYASV 157
           PS+T ++P    PES++  V
Sbjct: 285 PSSTSSSPEPRSPESLFKPV 304


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 139 RDLNAHFTGFWRVHFNLLD 83
           R +NAH +G   V  NLLD
Sbjct: 55  RYMNAHLSGIQLVVRNLLD 73


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 388 PDGTRRFRCKGQELYH 435
           PDGT  +   GQ++ H
Sbjct: 417 PDGTMGYMMDGQQMMH 432


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,003
Number of Sequences: 336
Number of extensions: 3834
Number of successful extensions: 32
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)