Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021200
(719 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12420| Best HMM Match : No HMM Matches (HMM E-Value=.) 101 4e-22
SB_19057| Best HMM Match : ADH_zinc_N (HMM E-Value=5.9e-13) 33 0.18
SB_38647| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_208| Best HMM Match : zf-C2H2 (HMM E-Value=1.7) 32 0.41
SB_46589| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_37986| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11) 29 2.9
SB_37040| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_41789| Best HMM Match : Mucin (HMM E-Value=0.56) 29 3.8
SB_41192| Best HMM Match : Mucin (HMM E-Value=0.56) 29 3.8
SB_9453| Best HMM Match : Mucin (HMM E-Value=0.56) 29 3.8
SB_22514| Best HMM Match : Drf_FH1 (HMM E-Value=1.8) 29 3.8
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71) 29 5.0
SB_9164| Best HMM Match : COX2_TM (HMM E-Value=3.7) 29 5.0
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 29 5.0
SB_8748| Best HMM Match : Astacin (HMM E-Value=0) 29 5.0
SB_46556| Best HMM Match : CDtoxinA (HMM E-Value=1.1) 28 6.6
SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_2653| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
>SB_12420| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 82
Score = 101 bits (243), Expect = 4e-22
Identities = 47/60 (78%), Positives = 50/60 (83%)
Frame = +2
Query: 35 IKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPEGVFPVVL 214
I C AAVAWE KPLSIE IEV PPKA EVR+KI ATGVCHTDAYTLSG DPEG+FP +L
Sbjct: 2 ITCQAAVAWEPKKPLSIETIEVAPPKAHEVRIKILATGVCHTDAYTLSGVDPEGLFPCIL 61
>SB_19057| Best HMM Match : ADH_zinc_N (HMM E-Value=5.9e-13)
Length = 303
Score = 33.5 bits (73), Expect = 0.18
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 253 GVTSVKPGDHVVPLYVPQCNTCKFCLNPKTNLCQKV 360
GV+ +K GD V C TC +C + NLC K+
Sbjct: 69 GVSDLKEGDRVAIEPGTPCRTCSYCKKGRYNLCAKM 104
>SB_38647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 395
Score = 33.5 bits (73), Expect = 0.18
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +1
Query: 256 VTSVKPGDHVVPLYVPQCNTCKFCLNPKTNLCQKVRSTQGQGVMPDG 396
V +V GD VV CNTCK C + + C+K + GV +G
Sbjct: 120 VKNVSIGDRVVVNPNSSCNTCKACRRGQPHFCEKGGTGSAIGVWKNG 166
>SB_208| Best HMM Match : zf-C2H2 (HMM E-Value=1.7)
Length = 836
Score = 32.3 bits (70), Expect = 0.41
Identities = 21/88 (23%), Positives = 37/88 (42%)
Frame = -3
Query: 408 ESPSAIWHHTLTLSRTNLLAQISFRIQAEFTCVALWDVQRYYVVPGLD*SDSSPTLYTIP 229
+ +A+ HT +RT ++ +++ + + L D+ R +P P L+T P
Sbjct: 315 DEEAALEEHTYASTRTLVIREVALQHPIAYDHFNLCDMMRQSQIPRRQRQSQIP-LWTAP 373
Query: 228 PPSCPSTTGNTPSGSFPESVYASVWQTP 145
P P + S PES +W P
Sbjct: 374 EPDLPVDSARARSPQAPES-DPPMWTAP 400
>SB_46589| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 562
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +2
Query: 56 AWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTL 175
AW G L ++ V P A + +IT TG T AYTL
Sbjct: 361 AWSFGLKLGLKSQNVGPGPAYLIPARITRTGTDGTPAYTL 400
>SB_37986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 348
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +1
Query: 256 VTSVKPGDHVVPLYVPQCNTCKFCLNPKTNLCQKVRSTQGQGVMPDG 396
V V GD VV + C C FCL + +LC+ G+ +G
Sbjct: 72 VQHVSVGDRVVINPLTSCGICDFCLKGQPHLCKVEGKNTAIGIKRNG 118
>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
Length = 1903
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 266 TEVTPHRHSTRFRRLHVPVLQETLPQDL-FRRVYTRQYGRLRW 141
T+ T RH+ RRL+ P E L Q+L F + Y ++ W
Sbjct: 1314 TDKTTKRHNIYIRRLYPPSKPENLKQELIFDKDLENSYQKVHW 1356
>SB_37040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 115
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +3
Query: 21 QSVK*LSAWPQSRGKQASRCPSRRLKWTRQKPVKCALRSRPPESAILTRIH 173
QS L+ P +RG Q + R KW + P KC ++ + E A++ R+H
Sbjct: 3 QSGNALTPLPHTRGIQTNTLLLR--KWAVEAPSKCRMKGQTKE-AVVQRVH 50
>SB_41789| Best HMM Match : Mucin (HMM E-Value=0.56)
Length = 683
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -3
Query: 228 PPSCPSTTGNTPSGSFPESVYASVWQTPVAVILTRTSP 115
PP P+ TPS S + ++ TP A T T P
Sbjct: 348 PPQSPTPAVTTPSADLAASKFPTITNTPTATTNTPTIP 385
>SB_41192| Best HMM Match : Mucin (HMM E-Value=0.56)
Length = 683
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -3
Query: 228 PPSCPSTTGNTPSGSFPESVYASVWQTPVAVILTRTSP 115
PP P+ TPS S + ++ TP A T T P
Sbjct: 348 PPQSPTPAVTTPSADLAASKFPTITNTPTATTNTPTIP 385
>SB_9453| Best HMM Match : Mucin (HMM E-Value=0.56)
Length = 642
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -3
Query: 228 PPSCPSTTGNTPSGSFPESVYASVWQTPVAVILTRTSP 115
PP P+ TPS S + ++ TP A T T P
Sbjct: 348 PPQSPTPAVTTPSADLAASKFPTITNTPTATTNTPTIP 385
>SB_22514| Best HMM Match : Drf_FH1 (HMM E-Value=1.8)
Length = 336
Score = 29.1 bits (62), Expect = 3.8
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = -3
Query: 276 PGLD*SDSSPTLYTIPPPSCPSTTGNTPSGSFPESVYASVWQTPVAVILTRTSPAFGGST 97
PG D + S +PPP P T TP+G+ P SV + + +P V + ++ F +
Sbjct: 216 PGPDNQNLSVRPTQLPPPP-PLPTSATPTGTTP-SVSPATYSSPTPVTIQGSTFTFDDNA 273
Query: 96 SIS 88
+S
Sbjct: 274 FLS 276
>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 28.7 bits (61), Expect = 5.0
Identities = 22/80 (27%), Positives = 36/80 (45%)
Frame = -3
Query: 261 SDSSPTLYTIPPPSCPSTTGNTPSGSFPESVYASVWQTPVAVILTRTSPAFGGSTSISSM 82
+ ++PT T P P+ P+ T TP+ P + TP LT+ +PA + + +
Sbjct: 50 TQTTPTP-TTPSPTAPTQTTPTPATPTPTTPTPKT-PTPTTSTLTKPTPATTPTPTKPTP 107
Query: 81 DSGLPASHATAAKHLITLPT 22
+ P + T H T PT
Sbjct: 108 TAHTPTT-PTPTAHTPTKPT 126
>SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71)
Length = 1281
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 18 QQSVK*LSAWPQSRGKQASRCPSRRLKWTRQKPV-KCALRSRPPESAILTRIHSPE 182
Q S K ++ PQ + KQASR LK KP + SRP ++++ T+ P+
Sbjct: 52 QASRKTKTSKPQDQDKQASRPRQASLKTKTSKPQDQDKQASRPRQASLKTKTSKPQ 107
>SB_9164| Best HMM Match : COX2_TM (HMM E-Value=3.7)
Length = 543
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = -3
Query: 228 PPSCPSTTGN-TPSGSFPESVYASVWQTPVAVILTRTSPAFGGSTSISSMDS 76
P + P++ G+ TP+GS ES+ S+ P AVI S A S ++SM++
Sbjct: 196 PEAVPTSAGSATPTGS--ESIATSMENDPKAVITFAGSAASTESEGMTSMEN 245
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 28.7 bits (61), Expect = 5.0
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Frame = -3
Query: 255 SSPTLYTIPPPSCPSTTGNTPSGSFPESVY--ASVWQTPVAVILTRTSPAFGGSTSISSM 82
SSP++ P P++ G +PS P S Y AS +P + + TSP++ ++ S
Sbjct: 422 SSPSMSPASPSYSPTSPGYSPSS--PSSGYSPASPSYSPTSPSYSPTSPSYSPTSPSYSP 479
Query: 81 DSGLPASHATAAKHLITLPTVDMTA 7
S P+ T+ + T P+ T+
Sbjct: 480 TS--PSYSPTSPSYSPTSPSYSPTS 502
>SB_8748| Best HMM Match : Astacin (HMM E-Value=0)
Length = 757
Score = 28.7 bits (61), Expect = 5.0
Identities = 23/66 (34%), Positives = 32/66 (48%)
Frame = -3
Query: 255 SSPTLYTIPPPSCPSTTGNTPSGSFPESVYASVWQTPVAVILTRTSPAFGGSTSISSMDS 76
SSP+ T P P+ T G SG+ P SV + P + +PA G +T + S
Sbjct: 527 SSPSASTNPTPTTAETAGT--SGA-PTSVPPAS-SAPASGAPPSGAPASGATTPTTGPIS 582
Query: 75 GLPASH 58
G PAS+
Sbjct: 583 GAPASN 588
>SB_46556| Best HMM Match : CDtoxinA (HMM E-Value=1.1)
Length = 208
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Frame = -3
Query: 474 NNCVLTEC*TTHEMVEFLSFTAES----PSAIWHHTLTLSRTNLLAQISFRIQAEFTCVA 307
+ CV + T HE V F S T S H +T L ++FR CV
Sbjct: 52 HECVTSRSITLHECVTFRSITLHERMTFRSITLHECVTFRSITLHECVTFRSITLHECVT 111
Query: 306 LWDV 295
W +
Sbjct: 112 FWSI 115
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Frame = -3
Query: 474 NNCVLTEC*TTHEMVEFLSFTAES----PSAIWHHTLTLSRTNLLAQISFRIQAEFTCVA 307
+ CV T HE V F S T S H +T L +++FR CV
Sbjct: 107 HECVTFWSITLHECVTFWSITLHECVTFRSITLHECVTFRNITLHERVTFRSITLHECVT 166
Query: 306 LWDV 295
W +
Sbjct: 167 FWSI 170
>SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1304
Score = 28.3 bits (60), Expect = 6.6
Identities = 21/84 (25%), Positives = 41/84 (48%)
Frame = -3
Query: 255 SSPTLYTIPPPSCPSTTGNTPSGSFPESVYASVWQTPVAVILTRTSPAFGGSTSISSMDS 76
+S T+Y++PP S +TP+ +S+ S TP + T + + ++ +
Sbjct: 1167 ASTTIYSLPP---TSMLNSTPATVSIDSIAPSP-TTPPSSSSTTITTLNASVMATATPSA 1222
Query: 75 GLPASHATAAKHLITLPTVDMTAL 4
L A+ +T I++P++D T L
Sbjct: 1223 SLEANASTMLSSGISVPSIDSTVL 1246
>SB_2653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1298
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/60 (30%), Positives = 25/60 (41%)
Frame = -1
Query: 437 KW*SSCPLQRNRLVPSGITP*P*VERTFWHKLVFGFKQNLHVLHCGTYRGTTWSPGLTEV 258
+W + + LV I P P + L FG+ NL+ GTY TW P + V
Sbjct: 1070 RWLDKGTISASELVAGCILPLPYLSYRLLRHL-FGYSHNLN----GTYTDATWKPSVERV 1124
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,898,043
Number of Sequences: 59808
Number of extensions: 505466
Number of successful extensions: 1392
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1379
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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