Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021199
         (806 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    28   1.4  
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ...    26   7.2  
SPAC1B3.02c |||transcription elongation factor, Elf1 family|Schi...    25   9.6  
SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch...    25   9.6  

>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
            Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
 Frame = -3

Query: 798  DILSHSRYRLNTLALRHAGLIFETSI*L---LAGSTRELSFSLARKLKRRTAS 649
            +ILS+S   +NTL   HA +++  +  L   L G+T+E +F + ++L     S
Sbjct: 1096 EILSYSLEYINTLDFCHAKVVYGDTDSLFVELPGATKEQAFDIGQQLANNITS 1148


>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 721 ITTGRINQGALFFVSSKTKTSHRIGRKNA 635
           + TG +N G+ F     + T+ RIG++N+
Sbjct: 60  LITGMVNVGSFFGCLISSPTTDRIGKRNS 88


>SPAC1B3.02c |||transcription elongation factor, Elf1
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 107

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 82  SPQCIYVKLLTGQDIYERWIDTSD 11
           S QC+   L    D+Y  WID  D
Sbjct: 55  SHQCLITALSAPIDVYSDWIDACD 78


>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +3

Query: 270 DGMFVRLVHF*FQNETIKRTNAPVRSVVYVILYVPCAILKFYSLKRIIIFHMVFLFKH 443
           DGM V   +F  +  T+K +    R  V +++   CA   F+    +I + + F+ KH
Sbjct: 178 DGMAVPFFYFAIKLLTVKPSRNAGRDWVLLVVLYECAFGIFFGC--VIGYLLSFILKH 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,907,582
Number of Sequences: 5004
Number of extensions: 53742
Number of successful extensions: 105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)