Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021199
         (806 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17017| Best HMM Match : TIL (HMM E-Value=4.8)                       42   8e-04
SB_35070| Best HMM Match : TIL (HMM E-Value=8.6)                       42   8e-04
SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.039
SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.039
SB_59124| Best HMM Match : Bac_luciferase (HMM E-Value=1.6)            31   1.1  
SB_9811| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.5  
SB_44547| Best HMM Match : 7tm_1 (HMM E-Value=7.9e-11)                 28   7.7  

>SB_17017| Best HMM Match : TIL (HMM E-Value=4.8)
          Length = 171

 Score = 41.5 bits (93), Expect = 8e-04
 Identities = 19/25 (76%), Positives = 21/25 (84%)
 Frame = +3

Query: 684 KKRAPWLILPVVICLSQRLSQHVSV 758
           ++ A WLILPVVICLSQRLS HV V
Sbjct: 147 RRVAIWLILPVVICLSQRLSLHVKV 171


>SB_35070| Best HMM Match : TIL (HMM E-Value=8.6)
          Length = 147

 Score = 41.5 bits (93), Expect = 8e-04
 Identities = 19/25 (76%), Positives = 21/25 (84%)
 Frame = +3

Query: 684 KKRAPWLILPVVICLSQRLSQHVSV 758
           ++ A WLILPVVICLSQRLS HV V
Sbjct: 123 RRVAIWLILPVVICLSQRLSLHVKV 147


>SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 35.9 bits (79), Expect = 0.039
 Identities = 16/20 (80%), Positives = 18/20 (90%)
 Frame = +3

Query: 684 KKRAPWLILPVVICLSQRLS 743
           ++ A WLILPVVICLSQRLS
Sbjct: 126 RRVAIWLILPVVICLSQRLS 145


>SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 35.9 bits (79), Expect = 0.039
 Identities = 16/20 (80%), Positives = 18/20 (90%)
 Frame = +3

Query: 684 KKRAPWLILPVVICLSQRLS 743
           ++ A WLILPVVICLSQRLS
Sbjct: 102 RRVAIWLILPVVICLSQRLS 121


>SB_59124| Best HMM Match : Bac_luciferase (HMM E-Value=1.6)
          Length = 1953

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = -3

Query: 789  SHSRYRLNTLALRHAGLIFETSI*LLAGSTRELSFS 682
            SH+ YRLNT+++ HA LI  T++ L    T  +S S
Sbjct: 1684 SHTDYRLNTVSIDHACLILTTALILYPLITHVISCS 1719


>SB_9811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 11/51 (21%), Positives = 29/51 (56%)
 Frame = +1

Query: 415 YFIWCFYLNIICFNVNGLCEISVDRFCIIILSLKIKFSRIWIFIYLMILFI 567
           +F+W      IC ++  L  +++ R  +I+   K +    ++FI++++++I
Sbjct: 103 WFVWPTMTVTICLSIFTLTSMAIHRRKVILNPFKPEIKHRYVFIWIVVIWI 153


>SB_44547| Best HMM Match : 7tm_1 (HMM E-Value=7.9e-11)
          Length = 332

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +1

Query: 430 FYLNIICFNVNGLCEISVDRFCIIILSLKIKFSRIWIFIYLMILF 564
           FY   +  +V  LC ++ DRF  I+  LK +       +++++LF
Sbjct: 112 FYDMAVIASVFNLCALTYDRFLAIVHPLKYQLVMTRTRVFILLLF 156


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,286,640
Number of Sequences: 59808
Number of extensions: 382346
Number of successful extensions: 778
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)